Protein Info for Xcc-8004.2266.1 in Xanthomonas campestris pv. campestris strain 8004

Annotation: FIG01211351: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 160 PF02639: DUF188" amino acids 26 to 155 (130 residues), 155.6 bits, see alignment E=2.6e-50

Best Hits

Swiss-Prot: 100% identical to Y1827_XANC8: UPF0178 protein XC_1827 (XC_1827) from Xanthomonas campestris pv. campestris (strain 8004)

KEGG orthology group: K09768, hypothetical protein (inferred from 100% identity to xcb:XC_1827)

Predicted SEED Role

"FIG01211351: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q4UVN3 at UniProt or InterPro

Protein Sequence (160 amino acids)

>Xcc-8004.2266.1 FIG01211351: hypothetical protein (Xanthomonas campestris pv. campestris strain 8004)
MNTPLPPGLAQIWVDADACPAVIRDILFRAAQRTGIPVTLVANHFLRTPTLAHVRALQVP
GGPDAADDAIAERVNAGDLVVTQDIPLAARVLERGAAAVSPRGEPFSSDSIAERLSVRGF
LEELRGAGVATGGPPALHARDRQAFAAQLDRWLARQSARS