Protein Info for Xcc-8004.2255.1 in Xanthomonas campestris pv. campestris strain 8004

Annotation: N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 563 signal peptide" amino acids 1 to 33 (33 residues), see Phobius details PF11741: AMIN" amino acids 38 to 123 (86 residues), 43 bits, see alignment E=4.2e-15 PF01520: Amidase_3" amino acids 315 to 530 (216 residues), 165 bits, see alignment E=1.8e-52

Best Hits

KEGG orthology group: K01448, N-acetylmuramoyl-L-alanine amidase [EC: 3.5.1.28] (inferred from 100% identity to xcc:XCC2299)

Predicted SEED Role

"N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28)" (EC 3.5.1.28)

MetaCyc Pathways

Isozymes

Compare fitness of predicted isozymes for: 3.5.1.28

Use Curated BLAST to search for 3.5.1.28

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0H2X6Q9 at UniProt or InterPro

Protein Sequence (563 amino acids)

>Xcc-8004.2255.1 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) (Xanthomonas campestris pv. campestris strain 8004)
VIESGSMTQGSHHRFAFALTAGLSLAVFSARAGEIKQVDVSTGATGTRAEIQLAGSGGFK
TLSLANPNRLVVDFPASSAKSGLKLPAAAGLVTSVRTGQPVPGTFRVVFELATPVTALKP
QMQTLGSASTLVIEWPGDFAPAKPVASTSSAVPAATTPPAAVPATRPLDAQAEAARATAA
LAASAQRASALPPPTPAPAPTPVPVPASAMPTVTPAPVPTTIATGVPTPRPGTVAAPGAP
ATTGGTRTTIATGTPSPAAILNGGNVAQVAPQGAAVTSAGVAAADAQNDDVPPRPLLPSE
ASRVKMAPGMRPLVVAIDPGHGGQDPGAMGPTGKREKDVTLAIGRELARQINATQGMKAY
MTRDTDVFIPLPMRAQKARSAKADIFISIHADAAENRSATGSSVYVLSTKGASSQRARWL
ADKENAADLVGGVRLQQTESTLANVLLDLAQSGHMKASEDAAGHVLGGLKRIGNNHKPQL
ERANFAVLRTSDMPAMLVETAFISNPDEERRLIDPSYQRKIASAVLDGIDTFFTRQPPPG
TLFAARAQAEADAAVGTVAGGSR