Protein Info for Xcc-8004.2228.1 in Xanthomonas campestris pv. campestris strain 8004

Annotation: Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 214 transmembrane" amino acids 17 to 38 (22 residues), see Phobius details PF10399: UCR_Fe-S_N" amino acids 11 to 44 (34 residues), 46.8 bits, see alignment 1.6e-16 TIGR01416: ubiquinol-cytochrome c reductase, iron-sulfur subunit" amino acids 13 to 198 (186 residues), 227.1 bits, see alignment E=7.2e-72 PF00355: Rieske" amino acids 118 to 179 (62 residues), 24.6 bits, see alignment E=1.9e-09

Best Hits

Swiss-Prot: 56% identical to UCRI_ALLVD: Ubiquinol-cytochrome c reductase iron-sulfur subunit (petA) from Allochromatium vinosum (strain ATCC 17899 / DSM 180 / NBRC 103801 / NCIMB 10441 / D)

KEGG orthology group: K00411, ubiquinol-cytochrome c reductase iron-sulfur subunit [EC: 1.10.2.2] (inferred from 100% identity to xcb:XC_1792)

Predicted SEED Role

"Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2)" in subsystem Ubiquinone Menaquinone-cytochrome c reductase complexes (EC 1.10.2.2)

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 1.10.2.2

Use Curated BLAST to search for 1.10.2.2

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0H2X6M9 at UniProt or InterPro

Protein Sequence (214 amino acids)

>Xcc-8004.2228.1 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) (Xanthomonas campestris pv. campestris strain 8004)
MANDGVNAPADTGRRRFLTATTAVVGAVGAGFLAVPFVKSWNPSARAKLAGAPVTADISA
LQEGQRLILEWRGQPIWIVKRSKAMLDALPSLDDRLKDPKSENKDQQPDYVLKNPEYRSI
KSDISVLVGLCTHLGCSPEMVAEIRPEPYDPQWKGGYFCPCHKSRFDMSGRVFDGVPAPI
NLLVPPHHYVDDNTLVIGVDPDAAGKPANSTGAA