Protein Info for Xcc-8004.2193.1 in Xanthomonas campestris pv. campestris strain 8004

Annotation: MFS permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 559 transmembrane" amino acids 32 to 56 (25 residues), see Phobius details amino acids 94 to 113 (20 residues), see Phobius details amino acids 122 to 142 (21 residues), see Phobius details amino acids 148 to 169 (22 residues), see Phobius details amino acids 182 to 202 (21 residues), see Phobius details amino acids 220 to 239 (20 residues), see Phobius details amino acids 278 to 300 (23 residues), see Phobius details amino acids 324 to 350 (27 residues), see Phobius details amino acids 363 to 381 (19 residues), see Phobius details amino acids 387 to 412 (26 residues), see Phobius details amino acids 425 to 445 (21 residues), see Phobius details amino acids 465 to 482 (18 residues), see Phobius details amino acids 530 to 551 (22 residues), see Phobius details PF07690: MFS_1" amino acids 44 to 440 (397 residues), 100.2 bits, see alignment E=5.9e-33

Best Hits

KEGG orthology group: None (inferred from 100% identity to xcc:XCC2356)

Predicted SEED Role

"MFS permease"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0H2X8A0 at UniProt or InterPro

Protein Sequence (559 amino acids)

>Xcc-8004.2193.1 MFS permease (Xanthomonas campestris pv. campestris strain 8004)
MTQGSTVANANGADAGLLSKERIVARPGFNRWLVPPAALAIHLCIGMAYGFSVFWLPLSK
ALGITESIACPADMGLFARMVATTCDWKISELQWMYTLFFVLLGCSAAIWGGWLERAGPR
KAGVVSALCWCGGLVISAAGIHFHQIWMLWLGSGVIGGIGLGLGYISPVSTLIKWFPDRR
GMATGMAIMGFGGGAMIGSPLADALMRHFATPTSVGVMETFLVMAALYFVFMMAGAFGYR
VPPSGWTPAGWTAPVASNNAMITANHVHVKKVWGIPQFWLLWGVLCLNVSAGIGVIGMSS
PMLQEVFGGRLIGVDAGFGSLDAAQLASIAAIAAGFTGLLSLFNIGGRFFWASMSDKLGR
KNTYTLFFLLGICLYAAAPSAGGVGGIALFVGIFCIILSMYGGGFATIPAYLADLFGTQM
VGAIHGRLLTAWATAGILGPVVVGYMREYQLAHGSPPSQVYNTTMYILAGMLVLGLICNL
LVRPVAARHFMTPDELAREKQLAHEKVDRSGQAVLAPEDMARIGHGGNPALVAFAWLAVG
VPMAFGIWVTLQKAFVLFH