Protein Info for Xcc-8004.2189.1 in Xanthomonas campestris pv. campestris strain 8004

Annotation: Two-component system sensor protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1364 transmembrane" amino acids 17 to 39 (23 residues), see Phobius details amino acids 315 to 337 (23 residues), see Phobius details PF03924: CHASE" amino acids 87 to 265 (179 residues), 153.2 bits, see alignment E=3.4e-48 PF00989: PAS" amino acids 352 to 460 (109 residues), 35.2 bits, see alignment E=5.1e-12 amino acids 496 to 618 (123 residues), 50.1 bits, see alignment E=1.2e-16 TIGR00229: PAS domain S-box protein" amino acids 352 to 469 (118 residues), 51.3 bits, see alignment E=6.4e-18 amino acids 496 to 630 (135 residues), 56.4 bits, see alignment E=1.6e-19 PF08448: PAS_4" amino acids 357 to 465 (109 residues), 32.5 bits, see alignment E=4.1e-11 amino acids 502 to 624 (123 residues), 31 bits, see alignment E=1.2e-10 PF13426: PAS_9" amino acids 362 to 462 (101 residues), 36.6 bits, see alignment 2.1e-12 amino acids 506 to 622 (117 residues), 51.4 bits, see alignment E=5.2e-17 PF00512: HisKA" amino acids 643 to 708 (66 residues), 74.4 bits, see alignment 2.8e-24 PF02518: HATPase_c" amino acids 755 to 870 (116 residues), 95.7 bits, see alignment E=1.1e-30 PF00072: Response_reg" amino acids 893 to 1007 (115 residues), 61 bits, see alignment E=5.5e-20 amino acids 1035 to 1148 (114 residues), 91.3 bits, see alignment E=2e-29 PF01627: Hpt" amino acids 1199 to 1276 (78 residues), 33.3 bits, see alignment 2.1e-11

Best Hits

KEGG orthology group: None (inferred from 100% identity to xca:xccb100_1812)

Predicted SEED Role

"Two-component system sensor protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0H2X6K9 at UniProt or InterPro

Protein Sequence (1364 amino acids)

>Xcc-8004.2189.1 Two-component system sensor protein (Xanthomonas campestris pv. campestris strain 8004)
MPHGRWDLRRKYGRRASIGAVLLLSAGLIAAFLVGFAVHRHNELERERRFDMVVRVLARN
ISERMYTFEHGLRGARGAVIGAGSDVISRDRFTRYSRSRDYPREFPGVLGYGYIHRVAAA
DEAAFLDAARADGAPDIQRRLLAPWDGERFIVLYFEPESSGNRPLGLDVASEPRRRIAAI
AAARSGQPTMTSPVSLSGYQTPSEGGFLVLLPVYREGMPLQTPQQRMDATTGWAYAPLSV
KQMLESTLGDRDDVAISLSDREDTQHTFYRSGIAAPESMRRAAHTQLLPIYGRTWVLTAR
PTLHFIGSLNQNSPWLMGSLVLGTAILLAALLGLYFSNGLRREEVLRKQMELAALVSHSS
EAIVAETPDGEITHWNPAAEAMFGYPADVAIGQDLTTLLSPQPYAMPQIDQDEAPPVAAL
SAAQTMRHRDGHQVFVLASKAPIIEHDNAVSGHSHFFRDISERVRSHQRIVDLNASLEHQ
VAERTSELVQFSVLQRAILAHAGYAIIATDSSGFVTMFNPAAEKLLGYSADDVIGRRKAS
QFIEADELQERALRLAEQTGTPVAGTLEAVAALTSLGRSDTSEWTYVSQDGRRLPVLLTL
STLRDDNDQVIGYLGVAVDLTEQKLHEKQLRLAMDAARSANQSKSDFLANMSHEIRTPMN
AILGMLYLLQRSELPGAAQDMVTKIDRSARSLLEIINDILDFSKIEAGRIDLERAPFDLN
QLFDNIADLMRSSLSAKPVEMIVEPLPRECRWLLGDALRINQVLVNLVGNAIKFTEQGEV
VLSVRRFPSGDPNKIKLLFSVRDTGIGISKEKQSLIFSPFLQADTSTSRRYGGSGLGLTI
SRRLIELMGGALEVESVPGRGSEFYFVITLERTDPPKAQQEAALLPPESMPRVLIADDHD
AALNNLVRIATELGWRVDAVASGQAAMQAIEDATEPYDIFLLDWRMPDIDGVAIARQVRA
RATPGRHPVIVMVTAYERRLLEQHPEQQDLDAVMTKPVTSAALHRLVEQLVDERPNARPA
TPTFVARRLEGAQLLLVDDSEINCEVAQRILEGEGAMVTVAHDGEQAVNTLKRAPDLFHL
VLMDVQMPVVDGYEATRRLRQIPSLASLPVIALTAGAFRPQQEKALEAGMNGFIAKPFNV
EELVTAIRHFLQPGSRRVSSLPHERAPAAGPEWAHTDPLLLDAARAQSLWREREPYERYL
LKLLRDNPDPAETAAAHLRNNELPAIGALAHKLRGAAGSLALPALAGASGDLESRVEQGH
DLTAALLALKDTMAQTTAAIHAFLQTSPSTQDTGQTGAALDDDSALILENALRSDDADKI
DHALLICAPRLPPPLQEDLQRAVDDFDFRRAEATLRDWQANHPR