Protein Info for Xcc-8004.2144.1 in Xanthomonas campestris pv. campestris strain 8004

Annotation: Hypothetical protein ass w/ COG3533Xanth

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1453 signal peptide" amino acids 1 to 42 (42 residues), see Phobius details PF07532: Big_4" amino acids 1298 to 1355 (58 residues), 52.3 bits, see alignment (E = 1.7e-18) amino acids 1385 to 1433 (49 residues), 34.5 bits, see alignment (E = 6.1e-13)

Best Hits

KEGG orthology group: None (inferred from 100% identity to xca:xccb100_1767)

Predicted SEED Role

"Hypothetical protein ass w/ COG3533Xanth"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0H2X6H7 at UniProt or InterPro

Protein Sequence (1453 amino acids)

>Xcc-8004.2144.1 Hypothetical protein ass w/ COG3533Xanth (Xanthomonas campestris pv. campestris strain 8004)
MQRLGLIVVQRMHSCLSLRAQRVGLAALCLLVLFVTSTASAGTKQAQEAPVVKANAAIGE
PRFRGLAHPVPESGVAFAPDGQLARIFAADVARGAGQVPGNDFWVDRMLVREGTGGGFDD
ENNWLFTRGRAAYLSSHVPEQPGFVGQVAYWHATDYDALFHLQSTQGTREVQWNEQPQQR
RQTTSYFSTVFEDAGAGVRMRLVKYITEQNVAVATFVLSSLDGAPHTLSVQARSPMATHA
DGAALTGAFDAYNAITTVFPRLSGDGFRVDGARLVREVAVPATGEAAPIKVQLGLLTHEL
PEAQAEYDRIAGQSPQQAYQQHVARYNRWWVDNVPYLDTPNANITKSLFYRWWVLRFNFL
DANVPGNDYQFPVAIEGVLGYNNAIVLTTGMFLDDLKYLRDPIYAYGSWLSAGETAGGGK
YVDNPGSPENWSNSYAQSITAAAWRSLQVHGGPPTLASKLARYGSGDVDGVLAAYDLNHN
GLIEYDWAAMTGNDADAVSFDWAKQHGEIRMDRTESAYVYANAHAAAQAAQLAGDSGTAQ
RMQTTAARIRKAVLEVLWQDRSSTADSVGLSGDLLKHRQAKGPRLPVDWKETNNYYPFSV
GLMPKHGDADDDPKYIRALRLFADAAQYPLFPFYTANQVDLHARGSGAEAGSNNFSTINA
TVAFRLLGAALRDYPSPYLSAHSYRTLLYWNAWATYINGDNRYPDQNEFWSKGSAANGGT
IGYRSWIHHTQLGATNFSMIEDAMGLRPRSDNQIELYPIDIGWEHFAADNLRYRDRNLSI
VWDRDGTHYAGQVPKGYSVYLDGRLAFRIDRLAHVLYDPASGQVTALPDAVNPAGAVQVL
ETHPAHLATMTQVAFAPASRAAQVLAKAGLDVTLPAAARLDLAHGAQATASFATPGFAAA
AAVDGSTANTPFWGTAGSPAASDWLALRFAGSRQVDQVVLYFYRSSSPGGEQHGFPSGTR
PGYAAPWMYVVQYQDGGSWKDVPGQVRDALIAEGNRNRVRFPPLRAQALRVVVTHAGSAR
TGIKELQVFNSSQAPPAFVGNVAPQVQAWQLDTPGADGTVRVNGRVGDDGLPSGALQVRW
SLLQGPSGGEVVFADPAAVQTTVRFTQAGHYTLRLAANDGALAGHADVQVNAPASPPVER
IALQSLATVSAQLTGTQYRVQALNDGVLPAADSTPNGSRRWGSYGRAQPQTVWLHYQWPR
PVRLSSSTLYFWSDQPDGAVAPPASWTLQTLQDGRWQDVSARSGYPVAANGAVSTVSFAP
IVTTGLRAVLTTQTLGTGRAAIGVDEWQAWSDVPRQLEPIDLRTAPGDLPTLPQEVTAFY
ADGSVLPVAVQWPDVASERLASEGKVEVQGLVEGVVPIKATLWVRATPPGQITAVQPLPV
VMAVVGQAPTLPGFVSLQYNDGSRERVPVHWPALAPARYAQPGEIPLTGTAQGRVPTGQV
AVPLMLQIKAATP