Protein Info for Xcc-8004.2122.1 in Xanthomonas campestris pv. campestris strain 8004

Annotation: A/G-specific adenine glycosylase (EC 3.2.2.-)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 430 TIGR01084: A/G-specific adenine glycosylase" amino acids 86 to 359 (274 residues), 335.1 bits, see alignment E=1.8e-104 PF00730: HhH-GPD" amino acids 116 to 248 (133 residues), 78.5 bits, see alignment E=7.1e-26 PF00633: HHH" amino acids 181 to 207 (27 residues), 28.3 bits, see alignment (E = 1.6e-10) PF14815: NUDIX_4" amino acids 317 to 428 (112 residues), 82.7 bits, see alignment E=2.6e-27

Best Hits

KEGG orthology group: K03575, A/G-specific adenine glycosylase [EC: 3.2.2.-] (inferred from 100% identity to xca:xccb100_1748)

Predicted SEED Role

"A/G-specific adenine glycosylase (EC 3.2.2.-)" in subsystem DNA repair, bacterial (EC 3.2.2.-)

Isozymes

Compare fitness of predicted isozymes for: 3.2.2.-

Use Curated BLAST to search for 3.2.2.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0H2X820 at UniProt or InterPro

Protein Sequence (430 amino acids)

>Xcc-8004.2122.1 A/G-specific adenine glycosylase (EC 3.2.2.-) (Xanthomonas campestris pv. campestris strain 8004)
VQLAIRRDAYPRSKHAPWCAAECRGQATDAYTARWWHCVSARTKRAAACGMKSPPRFFCT
PTALTLRLPTPADPMPVPATLTTDAFVDRLLHWFDGHGRHDLPWQHPRAPYRVWLSEIML
QQTQVAVVIPYFQKFVASFPTLADLAAADNDTVMAHWAGLGYYARARNLHAAAKQCVALH
AGELPRDFDALLALPGIGRSTAGAILSQAWNDRFPIMDGNVKRVLTRIHGIAGYPGLPVV
EKQLWQLAANHVAHVPAGRLADYTQAQMDFGATLCTRARPACMVCPLQENCVARREGLVE
ALPTPKPGKQLPEREATALLLENAHNEILLQRRPPTGIWASLWTLPQAETDSDLREWFAA
HIDGDYDRADEMPMIVHTFSHYRLHLQPLRLRKVALRQVLRDNDDLRWVARADLATLGLP
APIRKLLDAL