Protein Info for Xcc-8004.212.1 in Xanthomonas campestris pv. campestris strain 8004

Annotation: Transcriptional regulator, AsnC family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 189 PF13404: HTH_AsnC-type" amino acids 36 to 77 (42 residues), 57.1 bits, see alignment 2.6e-19 PF13412: HTH_24" amino acids 36 to 82 (47 residues), 57.5 bits, see alignment E=1.6e-19 PF01037: AsnC_trans_reg" amino acids 102 to 176 (75 residues), 77.6 bits, see alignment E=1.1e-25

Best Hits

KEGG orthology group: K03719, Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein (inferred from 99% identity to xca:xccb100_0174)

Predicted SEED Role

"Transcriptional regulator, AsnC family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0H2X2H5 at UniProt or InterPro

Protein Sequence (189 amino acids)

>Xcc-8004.212.1 Transcriptional regulator, AsnC family (Xanthomonas campestris pv. campestris strain 8004)
MATQRDCECCAPAAVRRKIRASSLAAAQHMDQPIALDRTDLRLLALLQTQGRSSNAELAA
QVNLSASACLRRTQRLEAAGIIAGYGARLDARALGLGLQAFVRVQLEQHGQPDIEHFAAG
VRGWDEVVACWALTGDMDYLLQVQVRDLEHFSRFLLDRLLNATGVSDVNSSFVLRTVKAP
EGLPLSHLA