Protein Info for Xcc-8004.2088.1 in Xanthomonas campestris pv. campestris strain 8004

Annotation: Xanthan biosynthesis oligosaccharidyl-lipid flippase GumJ

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 499 transmembrane" amino acids 25 to 48 (24 residues), see Phobius details amino acids 56 to 75 (20 residues), see Phobius details amino acids 95 to 118 (24 residues), see Phobius details amino acids 124 to 143 (20 residues), see Phobius details amino acids 164 to 185 (22 residues), see Phobius details amino acids 191 to 210 (20 residues), see Phobius details amino acids 222 to 240 (19 residues), see Phobius details amino acids 263 to 285 (23 residues), see Phobius details amino acids 305 to 329 (25 residues), see Phobius details amino acids 339 to 360 (22 residues), see Phobius details amino acids 370 to 390 (21 residues), see Phobius details amino acids 396 to 414 (19 residues), see Phobius details amino acids 425 to 447 (23 residues), see Phobius details amino acids 457 to 476 (20 residues), see Phobius details PF01943: Polysacc_synt" amino acids 25 to 289 (265 residues), 256.4 bits, see alignment E=3.5e-80 PF13440: Polysacc_synt_3" amino acids 46 to 338 (293 residues), 267.2 bits, see alignment E=1.7e-83

Best Hits

KEGG orthology group: K03328, polysaccharide transporter, PST family (inferred from 100% identity to xca:xccb100_1720)

Predicted SEED Role

"Xanthan biosynthesis oligosaccharidyl-lipid flippase GumJ" in subsystem Xanthan Exopolysaccharide Biosynthesis and Export

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0H2X6D3 at UniProt or InterPro

Protein Sequence (499 amino acids)

>Xcc-8004.2088.1 Xanthan biosynthesis oligosaccharidyl-lipid flippase GumJ (Xanthomonas campestris pv. campestris strain 8004)
VTAETSTMTSPTPPPRSLGSRAAGGAAVTMIGQSAKMIVQFGGIVLLARLLTPYDYGLMA
MVTAIVGAAEILRDFGLSAAAVQAKHVSREQRDNLFWINSGIGLMLSVVVFATAHWIADF
YHEPALVTISQALAVTFLLNGMTTQYRAHLSRGLRFGQVALSDVGSQVLGLGAAVAAALA
GWGYWALIVQQVVQAIVNLIIAGACARWLPRGYARQAPMRDFMSFGWNLMAAQLLGYASR
NVGQVIIGWRTGPDALGLYNRAFQLLMMPLNQINAPATSVALPVLSQLQDERERYSAFLL
RGQTVMVHLIFALFAFACALAMPLIVLVLGEQWREAVPLFQVLTLGGIFQTASYATYWVF
LSKGLMREQLVYSLVGRILLIACIFVGSRWGAMGVAIGYSFGLLLIWPLSLVWIGKITDA
PVGALFVNAMRALVAYGIAGGCAYYASVTVGGPLWQQLLVGAGAMALVCLLALAWPGFRR
DVVAIVNIRKLLTQAKARR