Protein Info for Xcc-8004.2062.1 in Xanthomonas campestris pv. campestris strain 8004

Annotation: Alpha-glucosidase (EC 3.2.1.20)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 692 signal peptide" amino acids 1 to 36 (36 residues), see Phobius details PF14508: GH97_N" amino acids 41 to 287 (247 residues), 226.4 bits, see alignment E=5.4e-71 PF10566: Glyco_hydro_97" amino acids 292 to 582 (291 residues), 362.5 bits, see alignment E=2.3e-112 PF14509: GH97_C" amino acids 585 to 685 (101 residues), 99.5 bits, see alignment E=1.6e-32

Best Hits

KEGG orthology group: K01187, alpha-glucosidase [EC: 3.2.1.20] (inferred from 100% identity to xcc:XCC2468)

Predicted SEED Role

"Alpha-glucosidase (EC 3.2.1.20)" in subsystem D-Galacturonate and D-Glucuronate Utilization or Maltose and Maltodextrin Utilization (EC 3.2.1.20)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 3.2.1.20

Use Curated BLAST to search for 3.2.1.20

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0H2X6B8 at UniProt or InterPro

Protein Sequence (692 amino acids)

>Xcc-8004.2062.1 Alpha-glucosidase (EC 3.2.1.20) (Xanthomonas campestris pv. campestris strain 8004)
MPLSSRRVRSTLGAAWIARLLVIATLGGAAATAQAEDAIDVASPGKILQVTVEVDGGTPY
YRVQRLGEPVVERSRLGFQLRDGRLDRGLQVLSQARSSHDDTWEQPWGETRLVRNHYNEL
RVSLGEREGAQRRFDVIVRVYDDGLGLRYHFPAQAALREAIIDEEVTEFAIAQPSEAWWI
PAGEPIHYEYLYQRTPLNEVALAHTPLTLRSRNGLHVALHEAALVDYAGMWLRRTEGQRL
RAHLSPAAEGWKVRRTLPFDTPWRTLQIADQATGLVESNLILNLNEPNALGDVSWVKPSK
YVGVWWSMHLNQQTWATGPKHAATTATTKRYIDFAAAHGFRGVLVEGWNPGWDGEWFGNG
GSFDFTRATPDFDLPALSSYAAGKGVHLIGHHETGCAVDHYEDQIAEAMDLYARFGVDSV
KTGYVCDDGQVERRNPAGGTPLREWHDGQWMARHHLHVVQEAAERHLAVNAHEPIKDTGL
RRTYPNWISREGARGMEYNAWGQPPNPPEHEVNLVFTRLLAGPMDYTPGIVSLKGRNGQA
IPSTLARQLALYVTLYSPIQMAADLPEHYLQHRDAFRFIEDVAVDWDQTRALNGEVGDYV
TIARKDRHSRDWFLGSITDEHGRLLQVPLGFLEPGVRYRAQIYRDGDDAGYVHNPFAFIR
EERQVSSIDTLELRLAPGGGQAIRFVPMESAP