Protein Info for Xcc-8004.2061.1 in Xanthomonas campestris pv. campestris strain 8004

Annotation: Predicted maltose-specific TonB-dependent receptor

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 942 signal peptide" amino acids 1 to 47 (47 residues), see Phobius details TIGR01782: TonB-dependent receptor" amino acids 68 to 942 (875 residues), 732 bits, see alignment E=5.8e-224 PF07715: Plug" amino acids 87 to 190 (104 residues), 59.6 bits, see alignment E=5.9e-20 PF00593: TonB_dep_Rec" amino acids 444 to 909 (466 residues), 79.2 bits, see alignment E=9e-26

Best Hits

KEGG orthology group: None (inferred from 100% identity to xcc:XCC2469)

Predicted SEED Role

"Predicted maltose-specific TonB-dependent receptor" in subsystem Maltose and Maltodextrin Utilization

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0H2X809 at UniProt or InterPro

Protein Sequence (942 amino acids)

>Xcc-8004.2061.1 Predicted maltose-specific TonB-dependent receptor (Xanthomonas campestris pv. campestris strain 8004)
MQHIQAIAGSKHQRTTCTWEGKMLNHKRTALSIAMAVAMAPTLAAAQTAAPSDAPASTQQ
NAGAVTELDKVQVTGLRRAIEGAISVKRDSTSIVEAISAEDIGRLPDVSIAESLARLPGL
AAQRVAGRAQVISVRGLSPDFSTTLLNGREVVSTGDNRSVEFDQYPSELVSGVTVYKTPD
AGLVGQGLSGTVDMQTARPLSYNERVIAIGGRYQRNSLGKAANVDPYGNRFNVSYIDQFA
DRTIGLTIGYAHTDMPIQENQVGLYEPWQQVNAQRQRPGVADGVYFSDGIKALRRTGNQK
RDGVMATLQYRPSNAWTSTLDAFHTEAEQIDTANQFELNLSNYNGGYTPGLNITDVRVND
RNTFLGGNASGVYPLVRGMYNKREDKIDAFGWNNEITAGAVKIIADLNYSKATRDELNLE
NNLQLAPMPQLDTVGVAVNGNGFSQLSPGLNYSNPDALFLTNTIYGSGYGKVPRVEDVLK
GARLQASFPMPEALSWFSDLDVGVNYAHREKQKTQPEGNITLGAQGEATVAADLQYAPVN
LGFAGIGALPAWNVPATVSRYMLFNPSDDASFLVSKAWTVEEKITTAWLRANLDTEWGVV
GVRGNIGVQLQSADQSSQANYWDASQPVGSEVRPIDDGKTYRDWLPSLNLAFQFPYEQTL
RFALAKQVARPRVDQLRASLEFGVDTSTGRPGASGGNPMLDPWRANALDISYERYFADRA
YIAAAFFYKDLKSYIYTQSRDNYDFSALVAGYVPPPGSAPVLTTGTFSAPFNGKGGTLRG
LELTASLPLDLVFAPLEGFGIQASATFNDSDVQIRDPESASSVGDGAISLPGLSKRVYNL
TAYYEHKGFEARVSQRRRSDFIGEIGNFNGNRTLRYVVGENITDAQISYNFADTSSLAGL
TLLLQASNLSNSPYRTYAETKDRPLEYIEWGRTFVLGVNYKF