Protein Info for Xcc-8004.2022.1 in Xanthomonas campestris pv. campestris strain 8004

Annotation: Type IV fimbrial biogenesis protein PilW

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 384 signal peptide" amino acids 1 to 35 (35 residues), see Phobius details PF07963: N_methyl" amino acids 5 to 29 (25 residues), 23.2 bits, see alignment (E = 3.9e-09) PF16074: PilW" amino acids 241 to 379 (139 residues), 95.5 bits, see alignment E=2.6e-31

Best Hits

KEGG orthology group: K02672, type IV pilus assembly protein PilW (inferred from 100% identity to xcb:XC_1623)

Predicted SEED Role

"Type IV fimbrial biogenesis protein PilW" in subsystem Type IV pilus

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0H2X7Z3 at UniProt or InterPro

Protein Sequence (384 amino acids)

>Xcc-8004.2022.1 Type IV fimbrial biogenesis protein PilW (Xanthomonas campestris pv. campestris strain 8004)
MTARTRAAGLSLIEMMIALVIGLVLLLGVIQVFSASRTAFQLSEGASRAQENARFALDFL
ARDIRMAGHFGCVNDQAHFVKGQGDPRVNLSTTTGSGSPLDFSVSIQGYEATGTSPGAQL
RLGGTLSPAAGVPSQIQGLNPAPLPGSDILVLRFLSPEGVPVTGLVRTGSNSIASFDAGR
LSRLTSGGVGTPTLFGIADCSHADVFTGTSAASSVTTSVDLSRYTAQPTGQTMLYRAESL
VYYVGTGASGEPALRRARAASDGTYAQNEELVEGIESLQLLYGLDSTAIISSATPPVGNI
TSQLTASAVGASADAAGANQWRRVGAVQVGILARSPNTANAVATANDDPVGVLGVSMQPP
SAPDGRYRASYELSIALRNRLFGN