Protein Info for Xcc-8004.1989.1 in Xanthomonas campestris pv. campestris strain 8004

Annotation: NADH-ubiquinone oxidoreductase chain G (EC 1.6.5.3)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 744 PF13510: Fer2_4" amino acids 14 to 89 (76 residues), 66.5 bits, see alignment E=4.3e-22 TIGR01973: NADH dehydrogenase (quinone), G subunit" amino acids 17 to 607 (591 residues), 679.5 bits, see alignment E=2.7e-208 PF00111: Fer2" amino acids 18 to 67 (50 residues), 27.6 bits, see alignment 5.7e-10 PF10588: NADH-G_4Fe-4S_3" amino acids 96 to 133 (38 residues), 58.5 bits, see alignment 9.4e-20 PF00384: Molybdopterin" amino acids 285 to 608 (324 residues), 133.5 bits, see alignment E=2.4e-42 PF01568: Molydop_binding" amino acids 676 to 730 (55 residues), 41.5 bits, see alignment 3.2e-14

Best Hits

KEGG orthology group: K00336, NADH dehydrogenase I subunit G [EC: 1.6.5.3] (inferred from 100% identity to xcb:XC_1595)

Predicted SEED Role

"NADH-ubiquinone oxidoreductase chain G (EC 1.6.5.3)" in subsystem Respiratory Complex I (EC 1.6.5.3)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 1.6.5.3

Use Curated BLAST to search for 1.6.5.3

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0H2X680 at UniProt or InterPro

Protein Sequence (744 amino acids)

>Xcc-8004.1989.1 NADH-ubiquinone oxidoreductase chain G (EC 1.6.5.3) (Xanthomonas campestris pv. campestris strain 8004)
MSAQPVNPNVPPDHVTVEIDGQSLVVPKGSMIIQAADKAGIPIPRFCYHEKLPIAANCRM
CLVDVEKSPKPSPACATPVMDGMKVTTRSEKALKYQRSVMEFLLINHPLDCPICDQGGEC
ELQDVSLGYGRSVSRFNERKRVVPDEDIGPLVATEMTRCIQCTRCVRFTADIAGTYELGG
MYRGENLQIGTYDGKPLTTEISGNVIDVCPVGALTNKVFQFRARPWELMARESLGYHDAM
GSNLFLHVRRGEVLRTVPRENEAVNECWLSDRDRYSHQGLYAEDRAVKPLKKVNGEWTEV
SWAEGLAAATQILRDNAGDQLGVLVHPATSNEEGALLARLAEGLGSGNLDHRLLNRDFSD
AAVAEAFATPLAEIEQADVVVLFGTNVRHELPLLHARLRKASIQNRTQIHSVNPVDFDFA
FTQASRTVVSPTQLAGALDDATLRDAVKGASRAVIVVGALAENHPQAATLRAAARAFAAA
TGASLCRIPQGANAVGLVSQGVLPTARTVAGMFAEPRQAYVVYGIEPGLDFADAAAARSA
LAGAKVVAFSQFACASTRDVADVILPIGALPEIDASLTNLDGRVQTARAAGRLPVEAREG
WRVLRALGGELGLAGFEFIDLVGLRAGMQQRSVTAATSAQPATASEGLEVAATAAIYRTD
AVVRRAAALQSHPLNIAPCVAMHPEQAAQLQVAAGQVVKVGTDAGRATLPVVLDKRVAPG
TVWIESGHGATAPLGAGRVTVVAA