Protein Info for Xcc-8004.198.1 in Xanthomonas campestris pv. campestris strain 8004

Annotation: carboxylesterase type B

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 540 signal peptide" amino acids 1 to 34 (34 residues), see Phobius details PF00135: COesterase" amino acids 44 to 516 (473 residues), 292.4 bits, see alignment E=1.2e-90 PF20434: BD-FAE" amino acids 120 to 240 (121 residues), 38.6 bits, see alignment E=1.3e-13

Best Hits

KEGG orthology group: K03927, carboxylesterase type B [EC: 3.1.1.1] (inferred from 99% identity to xca:xccb100_0160)

Predicted SEED Role

"carboxylesterase type B"

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 3.1.1.1

Use Curated BLAST to search for 3.1.1.1

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0H2X419 at UniProt or InterPro

Protein Sequence (540 amino acids)

>Xcc-8004.198.1 carboxylesterase type B (Xanthomonas campestris pv. campestris strain 8004)
VTRANRVDPRRRLLVCGGLLAGAAAAVPSLSAAAAPAPPRDTSTPVARVRSGQVRGVRSQ
GICVFKGIPYGGDTGPRRFQAPVLETPWDGIRDASAYSAAAPQPKASEPTSEDCLFLNVW
TPALRDGGKRPILVYIHGGGYTTGSGSDPLYDGTRLCTRGDVVVITVNHRLNVFGYLYLA
QLGDATFADSGNAGQLDLIQALQWVRAHAAEFGGDAGNVTVFGQSGGGAKIATLMAMPAA
RGLFHRAWTMSGQQVTAAGPRAATQRAQLLLDALKLSPDTLARIRTLPAAQLLAAAQVRD
PSRVENSALYLGPVLDARALPVHPFWPTAPVQSARIPMVIGNTRDETRAFLGNDAGNFAL
TWDTLPAKLEAQQYVDLLPQVVIAHYRRLYPHYTPSQVFFAATTAGRSWRGAIEEAEARA
RQGAPTWAYQLDWGSPLDGGKFGAFHTLDIPLVFDTITQPGSRTGDSPAAQQMADQMSTA
LLAFARHGDPNHRSLPRWKQYSLERRETLLFDVPSQLANDPRGGERQLYQQAPFIQRGTF