Protein Info for Xcc-8004.1951.1 in Xanthomonas campestris pv. campestris strain 8004
Annotation: Phosphatidylserine decarboxylase (EC 4.1.1.65)
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Swiss-Prot: 100% identical to PSD_XANC8: Phosphatidylserine decarboxylase proenzyme (psd) from Xanthomonas campestris pv. campestris (strain 8004)
KEGG orthology group: K01613, phosphatidylserine decarboxylase [EC: 4.1.1.65] (inferred from 99% identity to xca:xccb100_1607)Predicted SEED Role
"Phosphatidylserine decarboxylase (EC 4.1.1.65)" in subsystem Glycerolipid and Glycerophospholipid Metabolism in Bacteria (EC 4.1.1.65)
MetaCyc Pathways
- cardiolipin and phosphatidylethanolamine biosynthesis (Xanthomonas) (4/4 steps found)
- phosphatidylserine and phosphatidylethanolamine biosynthesis I (2/2 steps found)
- superpathway of phospholipid biosynthesis III (E. coli) (9/12 steps found)
- superpathway of cardiolipin biosynthesis (bacteria) (8/13 steps found)
- superpathway of phospholipid biosynthesis II (plants) (9/28 steps found)
KEGG Metabolic Maps
Isozymes
No predicted isozymesUse Curated BLAST to search for 4.1.1.65
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
See Q4UWE4 at UniProt or InterPro
Protein Sequence (282 amino acids)
>Xcc-8004.1951.1 Phosphatidylserine decarboxylase (EC 4.1.1.65) (Xanthomonas campestris pv. campestris strain 8004) VSLVTSLTYVLPHRLLSSLARALAYSKSPATKQWLIDTVTRKFGVDLSEAQEPDPRVYPT FNAFFTRALKPGARVPDADPQALLMPADGRISQLGPIENGRIFQAKGQSFTAAELLGDES AAVPFHNGLFATVYLSPKDYHRVHMPWSGTLRETVHVPGRLFSVGPDAVRNVPRLFARNE RLVCHFDTDFGPMASVMVGALLVSGVETVWSGVEIPRYGDRITRKDYRGKGITLERFAEM ARFNYGSTVIVLLPPGVAALEGGLAAESSVRLGQALARRQVA