Protein Info for Xcc-8004.1921.1 in Xanthomonas campestris pv. campestris strain 8004

Annotation: Metallopeptidase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 738 signal peptide" amino acids 1 to 64 (64 residues), see Phobius details PF05649: Peptidase_M13_N" amino acids 100 to 477 (378 residues), 373.2 bits, see alignment E=2e-115 PF01431: Peptidase_M13" amino acids 529 to 734 (206 residues), 238.8 bits, see alignment E=4.7e-75

Best Hits

KEGG orthology group: K07386, putative endopeptidase [EC: 3.4.24.-] (inferred from 99% identity to xca:xccb100_1586)

Predicted SEED Role

"Metallopeptidase"

Isozymes

Compare fitness of predicted isozymes for: 3.4.24.-

Use Curated BLAST to search for 3.4.24.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0H2X5Q8 at UniProt or InterPro

Protein Sequence (738 amino acids)

>Xcc-8004.1921.1 Metallopeptidase (Xanthomonas campestris pv. campestris strain 8004)
MRFVNRYRPTKLNKPQSRRSQGRVRLCSASISSPMPDMPLLKTSTLALALLVALPGCKRT
SDAESAPASAAIAAPAAPPTTAANTPAFDISELGPAASACQNLDEFVNGAWAKANPIPAD
HTSWGIDELLTEKSLLIQRELLEAAARQAGTQAPSLEQKIGALYASGMDEAAIEAAGAKP
IQPQLDKIAALHSGKDVAAYIISRHGEGDAQVFAFGAGADFHNADQQIAFTQEGGLGLPT
KDYYTGAEHAPIRAAYLAYIAKSFELTGTPAALAKTQANDVLALETRLAAASLAPVDARE
PKNQYRLVTLAEADKLTPHFPWEDFFATQGVPVGSGFSLAQPRFFAAFDQALASAPIAQW
QAYLRFHAIDDASTRLSKAFADNRFAFYGKTLSGQPEQLPRWKRVLRSVNGAMGEGVGQL
YVAKVFTPDAKQRASELVDNVRAALKTRIEQVDWMSAETKAKALAKWQTFLPKIGYPDTW
RDWSGLQITPGDYYGNLQAADTFNYRYDIAQIGKPTDRGRWSMTPQTVNAYYDPMTNSIN
FPAAILQPPYFDATADDALNYGGIGAVIGHEATHGFDDQGSQFDGAGNNVNWWTADDRRK
FDQRSNQLVKQFDAYAPLPSHPTLHVNGKLTLGENIADLGGTNVAYDALQTALQQHPERA
KAIDGYSPDQRFFLAFARSWRQRVRDQQQLVYLASDPHAPAKLRAIASPSNMPQFATAFA
CKPGDAMVRPEKDRVVIW