Protein Info for Xcc-8004.1919.1 in Xanthomonas campestris pv. campestris strain 8004

Annotation: FIG056164: rhomboid family serine protease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 228 transmembrane" amino acids 12 to 34 (23 residues), see Phobius details amino acids 68 to 91 (24 residues), see Phobius details amino acids 103 to 123 (21 residues), see Phobius details amino acids 129 to 148 (20 residues), see Phobius details amino acids 163 to 182 (20 residues), see Phobius details amino acids 188 to 206 (19 residues), see Phobius details PF01694: Rhomboid" amino acids 60 to 207 (148 residues), 128.6 bits, see alignment E=2.1e-41 PF08551: DUF1751" amino acids 61 to 124 (64 residues), 35 bits, see alignment E=1.8e-12

Best Hits

KEGG orthology group: None (inferred from 100% identity to xcb:XC_1541)

Predicted SEED Role

"FIG056164: rhomboid family serine protease"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0H2X648 at UniProt or InterPro

Protein Sequence (228 amino acids)

>Xcc-8004.1919.1 FIG056164: rhomboid family serine protease (Xanthomonas campestris pv. campestris strain 8004)
MLPQLPPVTKALLIANLGMFILQWALGDLGAGLLPSDAALSPLMLWPLSNGFDAFSPGAS
FMPWQLLTYAFLHGGFNHLFFNMLALFMFGAPLEQTWGQKRFLTYYLVCVAGAGVCQLLM
AWFTQSGAPVLGASGGVFGLLLAYGMLFPNQRVMLLFPPIPMKARTFVIVFGAIELLLGA
TGWQPGVAHFAHLGGMLFGWLLIRHWRGQPPFGGKRGKGRKPPLRVVR