Protein Info for Xcc-8004.1871.1 in Xanthomonas campestris pv. campestris strain 8004

Annotation: LPS-assembly lipoprotein RlpB precursor (Rare lipoprotein B)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 216 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details PF04390: LptE" amino acids 38 to 162 (125 residues), 41.7 bits, see alignment E=8.7e-15

Best Hits

KEGG orthology group: K03643, LPS-assembly lipoprotein (inferred from 100% identity to xca:xccb100_1542)

Predicted SEED Role

"LPS-assembly lipoprotein RlpB precursor (Rare lipoprotein B)" in subsystem KDO2-Lipid A biosynthesis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0H2X7Q3 at UniProt or InterPro

Protein Sequence (216 amino acids)

>Xcc-8004.1871.1 LPS-assembly lipoprotein RlpB precursor (Rare lipoprotein B) (Xanthomonas campestris pv. campestris strain 8004)
MIRFPTAFAASLVLVSSLTACGFHLRNSLALPPDTPAVKVQSALQYSELAKLLRRGLKAA
GATLADEDAKSGFAQVQVLSERWGDLPIAIDSQGRAQEFSLRYAAIFTVTTANGAILVPQ
QVIELSRDYVSPPVDATGTATEREILADELRKDMSASILRRIDSVVRARVERGESLESTP
TAPLQPSTTPPVQPSGTPESSVPASLPPAPQPSNNN