Protein Info for Xcc-8004.185.1 in Xanthomonas campestris pv. campestris strain 8004

Annotation: Trehalose synthase (EC 5.4.99.16)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1116 TIGR02456: trehalose synthase" amino acids 22 to 558 (537 residues), 992.1 bits, see alignment E=6e-303 PF00128: Alpha-amylase" amino acids 45 to 399 (355 residues), 261.8 bits, see alignment E=1.9e-81 PF16657: Malt_amylase_C" amino acids 478 to 554 (77 residues), 92.6 bits, see alignment 2e-30 TIGR02457: putative maltokinase" amino acids 575 to 1106 (532 residues), 700.6 bits, see alignment E=1.4e-214 PF18085: Mak_N_cap" amino acids 608 to 694 (87 residues), 32.7 bits, see alignment 2e-11

Best Hits

Predicted SEED Role

"Trehalose synthase (EC 5.4.99.16)" in subsystem Trehalose Biosynthesis (EC 5.4.99.16)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

No predicted isozymes

Use Curated BLAST to search for 5.4.99.16

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0H2X3Y0 at UniProt or InterPro

Protein Sequence (1116 amino acids)

>Xcc-8004.185.1 Trehalose synthase (EC 5.4.99.16) (Xanthomonas campestris pv. campestris strain 8004)
MNAVPALQADAEQSAVVADQLWYKDAIIYQVHVKSFFDSNDDGIGDFPGLISKLDYIAEL
GVDTIWLLPFYPSPRRDDGYDIAEYMAVHPDYGTIADFEQLVAQAHARGIRIVTELVINH
TSDQHPWFQRARNAPAGSPERDFYVWSDTDQEYEGTRIIFCDTEKSNWTWDPVAGQYFWH
RFYSHQPDLNFDNPAVLESVLEVMRFWLDRGVDGLRLDAVPYLIERSGTSNENLPETHAI
LRKIRATLDAEYPDRMLLAEANMWPEDTQQYFGQNADECHMAFHFPLMPRMYMAIAREDR
FPITDIMRQTPEIPETCQWAIFLRNHDELTLEMVTDSERDYLWQTYASDRRARINLGIRR
RLAPLLERDRRRIELMTSLLLTMPGTPVLYYGDEIGMGDNIHLGDRDGVRTPMQWSIDRN
GGFSRADPAALVLPPVMDPLYGFQAVNVEAQIRDQHSLLTWTRRVLSVRKRYQAFGRGTL
RFLYPGNRRMLAYLRCYQDETVLCVANLSHTLQAVELDLSEFEGRVPVDIIGGGSFPPIG
RLTYLLTVPPFGFYAFQLVSEGTLPDWHVPSPVPLPDYRTLVLRSDTEESAALLPHLATL
EGEILPAWLSARRWFSAKDQALKSVRISRRTPLPGDEPMSLLELDVELEDGHHECYMLPV
GIVWEREHPSTLAEQLALARVRQGREVGYLTDAFALKPMVRGVIDALRHDAALDFHDGDD
ASQQGQVRFESTPALAALEIPDDPEIRWLSAEQSNSSLVVADKAVFKLLRHVATGANPEI
EIGRRLTEMGYANAAPLLGSVSRVDAQGTITTIALLQGFIRNQGDAWRWTLDHLARSFDE
YATAQTDEARNEAVAGYDAFAAVVGKRLAELHEALSRSTDDADFAPQRIDLPTANDVVGG
VARQVEEMWETVHARLGATDDAAEREALESVLAERPQLDALLAKAPSVLAESLLTRVHGD
FHLGQILVAFDDVVLIDFEGEPAKPLAERRAKASPLRDVAGFLRSLDYASEVSARGEEGT
AARAGVGVDAHLDDFLVEFRRRSTQSFLDAYHAVLDASAHPWIAPAAFNAATLLFLVEKA
CYEVRYEAANRPGWLMVPIQGLRRILQRARAGAGDT