Protein Info for Xcc-8004.184.1 in Xanthomonas campestris pv. campestris strain 8004

Annotation: Alpha-amylase (EC 3.2.1.1)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1038 PF11896: GlgE_dom_N_S" amino acids 387 to 571 (185 residues), 178.2 bits, see alignment E=3e-56 PF21702: GLGE_C" amino acids 941 to 1025 (85 residues), 53.6 bits, see alignment E=3.3e-18

Best Hits

KEGG orthology group: None (inferred from 100% identity to xcb:XC_0141)

Predicted SEED Role

"Alpha-amylase (EC 3.2.1.1)" in subsystem Maltose and Maltodextrin Utilization or Trehalose Biosynthesis (EC 3.2.1.1)

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 3.2.1.1

Use Curated BLAST to search for 3.2.1.1

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0H2X2T5 at UniProt or InterPro

Protein Sequence (1038 amino acids)

>Xcc-8004.184.1 Alpha-amylase (EC 3.2.1.1) (Xanthomonas campestris pv. campestris strain 8004)
MRMCVVNEAAVADPSRLEARCVAAREAGCDYVVVAPPFAHDAQGRLVEPNAGDAQAQQLQ
TCVEAAQRAGVKLLLDVRLDEVGGSSAVVRDNPQWFRARSTAVPDPRQPRATPEVAEARF
AYAQEGAALVEWWSARLLEWVNQGVGGFCLLQPQQIPAQRWRELITRVHAQAPEVIFAAW
TPGLGSEALQQLAGAGFDAAFSSLAWWDGRGSWFFDEDAALRALAKRVVAIVEAADGSSA
ARRAQHWQLASALGGAWVLEDHQLESLPLRVRATDGPQPDNAGLRLRPLLREGTGLTAVA
VEPLGGLPSLLLINGDPDHVVPVPAPDLLRLLGDAEALVAEDGRTLSGSTLEALEPGEVR
VYRSVPARHVLAVPRMRPRVQTAAAWPRVCIESVTPSVDNGRFPVKRTVGDRICVEADAF
CDGHDRIAVAVLWRPADAKTWASAPMRALGNDRWRAEFPLERIGTYEFRVEGWRDVFATL
HADLEKKRAASTVLPVDVQEAVAVVQAAHARSEGALATQLQDILTRIGAQSEPLQQLAIV
LEPDTAQAMALADDKPFRSEYPVTFRVESERRAAHFSSWYELFPRSQSGDGQRHGTFDDV
IGRLAHIRAMNFDVLYMPPIHPIGAKNRKGRNNAVTAQDGEPGSPYAIGAADGGHTEVHA
ELGGLEGFRRLIQAARAHGLEVALDFAIQCAPDHPWLQEHKDWFTWRADGSIPYAENPPK
KYQDIVNVDFYASGAVPDLWNTLRDAVLFWVNEGVTLFRVDNPHTKPFPFWEWLIADVRG
RRPDVVFLSEAFTRPKMMYRLAKCGFSQSYTYFTWRNHKHELREYIEELNDGVPRECFRP
HFFVNTPDINPLFLQTSGRNGHLIRAALATTLSGLWGMYQGFELCEATPLAPGKEEYLDS
EKYQLRAWPERAPGDIVDEITRFNQLRRMHPELQSHLGTRFYQAHNDQVLYFGKFLDAGY
LSRSRSMVLVAINLDPQAGQDAEVEIPLWELGLPDHASVAVEDLWDGHRFTWHGKTQHIR
LEATRPFALWRIRAGEVA