Protein Info for Xcc-8004.1821.1 in Xanthomonas campestris pv. campestris strain 8004

Annotation: Transmembrane transport protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 409 signal peptide" amino acids 1 to 31 (31 residues), see Phobius details transmembrane" amino acids 46 to 67 (22 residues), see Phobius details amino acids 79 to 99 (21 residues), see Phobius details amino acids 105 to 128 (24 residues), see Phobius details amino acids 140 to 160 (21 residues), see Phobius details amino acids 167 to 188 (22 residues), see Phobius details amino acids 223 to 243 (21 residues), see Phobius details amino acids 255 to 275 (21 residues), see Phobius details amino acids 287 to 306 (20 residues), see Phobius details amino acids 312 to 335 (24 residues), see Phobius details amino acids 344 to 366 (23 residues), see Phobius details amino acids 377 to 396 (20 residues), see Phobius details PF07690: MFS_1" amino acids 22 to 363 (342 residues), 101.5 bits, see alignment E=2.3e-33 amino acids 265 to 401 (137 residues), 34.4 bits, see alignment E=5.9e-13

Best Hits

KEGG orthology group: None (inferred from 100% identity to xca:xccb100_1500)

Predicted SEED Role

"Transmembrane transport protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0H2X7L7 at UniProt or InterPro

Protein Sequence (409 amino acids)

>Xcc-8004.1821.1 Transmembrane transport protein (Xanthomonas campestris pv. campestris strain 8004)
MSTSAAPRTRAHWGLLVTASAMLMLTMGARQTTGLFVEPIHRQTGIGIASISFALAIGQL
VWGAVQPVFGAIADQRGPLPVLMFGGVLLAAGLGLAPWWTSEWGLIVSLGVLAAAGAGAG
SFSVLIGATAHRIAPERRSFAAGLINAGGSLGQFVFAPLVQLTIGAAGWAKAMTGLALVS
LLTLPLAWPLRRVPSATGAHTGAVAGEISLRAQLQLALRDRSYWCLHLGFFTCGVHIAFL
VTHLPGEVALCGLPASVSAVSIALIGLFNVAGSLTIGKLGERVRMKWLLTAMYASRAVMI
GLYLIAPPTPLTFYLFAAGLGFTWLATVPPTAGLIGKLFGPRYLGTLFGLMLLSHQLGGF
FGAWLGGLALEHSGNYLWMWYGDIVLAVAAALVNLPIREAVPVRHVAVA