Protein Info for Xcc-8004.1775.1 in Xanthomonas campestris pv. campestris strain 8004

Annotation: Transcription-repair coupling factor

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1155 PF17757: UvrB_inter" amino acids 136 to 222 (87 residues), 84.5 bits, see alignment 1.6e-27 TIGR00580: transcription-repair coupling factor" amino acids 153 to 1088 (936 residues), 1075.2 bits, see alignment E=0 PF21132: MFD_D3" amino acids 383 to 458 (76 residues), 74.8 bits, see alignment 1.5e-24 PF02559: CarD_TRCF_RID" amino acids 486 to 542 (57 residues), 63.7 bits, see alignment 4.9e-21 PF00270: DEAD" amino acids 611 to 773 (163 residues), 88.8 bits, see alignment E=1.2e-28 PF04851: ResIII" amino acids 613 to 767 (155 residues), 40.9 bits, see alignment E=7.5e-14 PF00271: Helicase_C" amino acids 814 to 915 (102 residues), 64.6 bits, see alignment E=3.4e-21 PF03461: TRCF" amino acids 1016 to 1108 (93 residues), 95.7 bits, see alignment E=6.2e-31

Best Hits

Predicted SEED Role

"Transcription-repair coupling factor" in subsystem DNA-replication or Transcription factors bacterial

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0H2X5V8 at UniProt or InterPro

Protein Sequence (1155 amino acids)

>Xcc-8004.1775.1 Transcription-repair coupling factor (Xanthomonas campestris pv. campestris strain 8004)
MPSPTFPSPPLPKSGQLRAYWRAPSSPTALAWSIARAAEAHAGPVLVIARDNQSAHQIEA
DLHALLGDASALPVVPFPDWETLPYDQFSPHPEIISQRLAALHRLPGLTRGVVIVPVQTL
LQQLAPLSYIVGGSFDLTVGQRLDLDAEKRRLESAGYRNVPQVMDPGDFAVRGGLLDVFP
MGADTPLRIELLDEDIDSIRAFDPESQRSLDKVDAVKMLPGREVPMDDASVERVLACLRE
RFDVDTRRSALYQDLKSGIAPSGVEYYLPMFFSKTATLFDYLDTRVLPLIATGVSNAADA
FWLQAQNRYEQRRHDVERPLLPPDELYQSPDALRERLNKLARIEVWPADHPRSDEAAPLG
DQPLPPLPVAAKDAPAGQALASFLGHYPGRVLVAADSAGRREALMEVLAAAQLKPDVVAD
LPAFLAATKLRFGITVAPLEDGFALDTPQIAVLTERQLFPERANQPRRTRRVGREPEAII
RDLGELSEGAPIVHEDHGVGRYRGLIVLDAGGMPGEFLEIEYAKGDRLYVPVAQLHLISR
YSGASADTAPLHSLGGEQWTKAKRKAAEKVRDVAAELLEIQARRRARAGLALQVDRAMYE
PFAAGFPFEETTDQLAAIDATLRDLGSSQPMDRVVCGDVGFGKTEVAVRAAFAAASAGKQ
VAVLVPTTLLAEQHYRNFRDRFADYPMKVEVLSRFKSTKEIKAELEKVASGDIDVIIGTH
RLLQPDVKFKDLGLVVVDEEQRFGVRQKEALKAMRANVHLLTLTATPIPRTLNMAMAGLR
DLSIIATPPPNRLAVQTFITAWDNTLLREAFQRELSRGGQLYFLHNDVESIVRMQRDLSE
LVPEARIGIAHGQMPERELERVMLDFQKQRFNVLLSTTIIESGIDIPNANTIIINRADRF
GLAQLHQLRGRVGRSHHRAYAYLVVPDRRSMTSDAEKRLEAIASMDELGAGFTLATHDLE
IRGAGELLGEDQSGQMAEVGFSLYTELLERAVRSIRQGKLPDLDAGEEVRGAEVELHVAS
LIPEDYLPDVHTRLTLYKRISSARDSDALRELQVEMIDRFGLLPDPVKHLFAIAELKLQA
NALGVRKLDLGENGGRLVFEAKPSIDPMTVIQMIQKQPKIYTMDGPDKLRIKLPLPEAAD
RFKAARGLLTALAPR