Protein Info for Xcc-8004.1726.1 in Xanthomonas campestris pv. campestris strain 8004

Annotation: Phenazine biosynthesis protein PhzF like

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 292 transmembrane" amino acids 184 to 203 (20 residues), see Phobius details TIGR00654: phenazine biosynthesis protein, PhzF family" amino acids 6 to 290 (285 residues), 192.7 bits, see alignment E=4.6e-61 PF02567: PhzC-PhzF" amino acids 9 to 282 (274 residues), 195.2 bits, see alignment E=8.9e-62

Best Hits

KEGG orthology group: K06998, (no description) (inferred from 100% identity to xcb:XC_1371)

Predicted SEED Role

"Phenazine biosynthesis protein PhzF like"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0H2X5T3 at UniProt or InterPro

Protein Sequence (292 amino acids)

>Xcc-8004.1726.1 Phenazine biosynthesis protein PhzF like (Xanthomonas campestris pv. campestris strain 8004)
MRTFRYLQLDVFSNRPGAGNPLGVVVDAGALSAQQMQQIAAWLNLSETVFFLPVSAPGAD
YHIRIFTPRAELPFAGHPSVGAAWVARTHGLVGYRQDNRLYQQCAAGVLPVDVFDRHDVV
LVRLRAPRAQCSDTGTHHAAALAQVTRAFAMSAQAPALWNNGPSWWLLELADEAAVRTAV
PDLAAIAALTAASGAVGLAIYAAAASDAEDLVVRAFCPGDGIPEDPVTGSANACIAARLL
AEDRLPGRQGRYVASQGREVGRDGRVEVEVDAAGDVWIGGATQQVIEGRIAW