Protein Info for Xcc-8004.1721.1 in Xanthomonas campestris pv. campestris strain 8004

Annotation: Putative Holliday junction resolvase YggF

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 155 PF03652: RuvX" amino acids 12 to 146 (135 residues), 126.1 bits, see alignment E=6.3e-41 TIGR00250: putative transcription antitermination factor YqgF" amino acids 14 to 145 (132 residues), 98.5 bits, see alignment E=1.6e-32

Best Hits

Swiss-Prot: 100% identical to YQGF_XANC8: Putative pre-16S rRNA nuclease (XC_1366) from Xanthomonas campestris pv. campestris (strain 8004)

KEGG orthology group: K07447, putative holliday junction resolvase [EC: 3.1.-.-] (inferred from 99% identity to xca:xccb100_1414)

Predicted SEED Role

"Putative Holliday junction resolvase YggF"

Isozymes

Compare fitness of predicted isozymes for: 3.1.-.-

Use Curated BLAST to search for 3.1.-.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q4UWY8 at UniProt or InterPro

Protein Sequence (155 amino acids)

>Xcc-8004.1721.1 Putative Holliday junction resolvase YggF (Xanthomonas campestris pv. campestris strain 8004)
MPEAGAIRPDATVLGFDVGSRRIGVAVGTALGAGARAVAVINVHANGPDWVALDRVHKEW
RPAGLVVGDPLTLDDKDQPARKRAHAFARELRERYALPVVLIDERSSSVEAAQRFARERA
DGRKRRRDADTLDAMAAAVIVERWLSAPEQATLLP