Protein Info for Xcc-8004.1694.1 in Xanthomonas campestris pv. campestris strain 8004

Annotation: Ferrichrome-iron receptor

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 772 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details PF07715: Plug" amino acids 58 to 157 (100 residues), 74.3 bits, see alignment E=1.1e-24 TIGR01783: TonB-dependent siderophore receptor" amino acids 60 to 772 (713 residues), 245.8 bits, see alignment E=5.3e-77 PF00593: TonB_dep_Rec" amino acids 232 to 728 (497 residues), 174 bits, see alignment E=1e-54

Best Hits

KEGG orthology group: K02014, iron complex outermembrane recepter protein (inferred from 100% identity to xca:xccb100_1389)

Predicted SEED Role

"Ferrichrome-iron receptor" in subsystem Iron acquisition in Vibrio or Transport of Iron

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0H2X5L4 at UniProt or InterPro

Protein Sequence (772 amino acids)

>Xcc-8004.1694.1 Ferrichrome-iron receptor (Xanthomonas campestris pv. campestris strain 8004)
MTPRISPLTSAVLLTLSAPAFAQPGDAPAPPGAVDLDAIRVQQERAQKPSSPKYTEALRD
TPQTITVVTKQTMDQQNLLSLRDVLSTLPGITFGAGEGGGGYGDSINLRGFTASSDITTD
GVRDSAQYSRSDTFNLEAVELINGANSAMSGAGSVGGNINLVTKTAGQGDFTNVLIGGGS
DRYGRLTVDSNYDFENGTAVRLNTMGHTQDVPGRDEEFRHRWGFAPSVAFGLGSDTRFTL
SYLHQHDNNLPQYGVPFALSPFNDGPLPGVDRETYYGYRNVSRQEIDVDMLTGVLEMDFD
DNVKLRSLARVQRVDQTTTATAPEGTWCLPNNTNAYTGRACVGQPPSTWNPNSGPRGLVR
ETENFIAHSQTDLTATLHTGAIEHRVVAGVAFSKEDFELDSGSIFRNADGSTTGITYPLQ
TFDNPYNIWTGPQNYFRTGRSKGSLTNQAVYLFDTLQFNEQWMLNLGGRYEHNEGDSTTY
TVNATGGVTGVTPGFPAGSEEDLFSYRAGLVFKPVDNASLYLSYANSKTPSKASVNGSCT
PIATATVGANCNVEPESAVNIELGGKWDVLNERLALTAAVFRNERENYKVNSGDPLIPEQ
VLDGKARVDGIALGAAGYLTERWSVFANYTFLDSEVLQSVSNRTASLTGDPIAGRELVQT
PRNAGNLWTTYQLNEWTFGYGVNYQGSFYPNNTSTAVYRKTDAYWVHRAMVGLRVNDWLS
LQLNVNNLFDKEYYTSIRNNLTVNAAGTVTAGSGWALPGDGRSAVLNATFSF