Protein Info for Xcc-8004.1684.1 in Xanthomonas campestris pv. campestris strain 8004

Annotation: DNA transport competence protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 110 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details PF12836: HHH_3" amino acids 25 to 86 (62 residues), 74.3 bits, see alignment E=1e-24 TIGR00426: competence protein ComEA helix-hairpin-helix repeat region" amino acids 26 to 86 (61 residues), 76.9 bits, see alignment E=4.9e-26 PF03934: T2SSK" amino acids 27 to 80 (54 residues), 26.6 bits, see alignment E=9.8e-10

Best Hits

KEGG orthology group: K02237, competence protein ComEA (inferred from 99% identity to xom:XOO_1207)

Predicted SEED Role

"DNA transport competence protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0H2X5R1 at UniProt or InterPro

Protein Sequence (110 amino acids)

>Xcc-8004.1684.1 DNA transport competence protein (Xanthomonas campestris pv. campestris strain 8004)
MKSFTVVLKSLLLALLLSSNAYALDKVDINTASAEELDKVLMNVGRSKAEAIVEHRQANG
PFKSAEELALVKGIGLKTVERNRDLIEVGATMAPAKKAAKGAAVKPVGRR