Protein Info for Xcc-8004.1622.1 in Xanthomonas campestris pv. campestris strain 8004

Annotation: Membrane protein with DUF350 domain

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 134 transmembrane" amino acids 12 to 34 (23 residues), see Phobius details amino acids 46 to 65 (20 residues), see Phobius details amino acids 77 to 98 (22 residues), see Phobius details amino acids 110 to 132 (23 residues), see Phobius details PF03994: DUF350" amino acids 15 to 68 (54 residues), 53.7 bits, see alignment E=8.4e-19 amino acids 80 to 132 (53 residues), 46.2 bits, see alignment E=1.9e-16

Best Hits

KEGG orthology group: K08989, putative membrane protein (inferred from 100% identity to xca:xccb100_1321)

Predicted SEED Role

"Membrane protein with DUF350 domain"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0H2X540 at UniProt or InterPro

Protein Sequence (134 amino acids)

>Xcc-8004.1622.1 Membrane protein with DUF350 domain (Xanthomonas campestris pv. campestris strain 8004)
MNPINLQSFLAFLSYFGTGLGVLIVAVVLVTLVTPHKDFTLLRQGNVAAATALAGNLIGV
ALPLHSAITHSVSLVDALIWGVVACGIQVVAYLLANLVAGRISRQITDNVAAAGIFSAGV
SIAVGLINAAAITP