Protein Info for Xcc-8004.1581.1 in Xanthomonas campestris pv. campestris strain 8004

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 923 signal peptide" amino acids 1 to 29 (29 residues), see Phobius details PF07715: Plug" amino acids 51 to 160 (110 residues), 89.9 bits, see alignment E=1.5e-29 PF00593: TonB_dep_Rec_b-barrel" amino acids 333 to 887 (555 residues), 124.2 bits, see alignment E=1.3e-39

Best Hits

KEGG orthology group: K02014, iron complex outermembrane recepter protein (inferred from 100% identity to xcb:XC_1241)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0H2X709 at UniProt or InterPro

Protein Sequence (923 amino acids)

>Xcc-8004.1581.1 hypothetical protein (Xanthomonas campestris pv. campestris strain 8004)
MNCKSNKLRDAVVLALVVGVGGTGTAIAQEAGTTNLDKIEVTGSRIKSADIETSQPVLTL
TRQDIDKQGVTSVADVLQRVAANGAALNRTFNNGGDGSSGIALRNLGSARTLVLVNGRRW
TTGLDGSVDLNTIPTAMVERIDILKDGASTIYGSDAIAGVVNIITRKNFDGAEAGVNVGQ
YSDGDGQRQAYDFTLGTTTDRATLMVGASYVKEDSVMAGDREISAGGPPFFSGQSGTGFP
GSYVRNGSRRILINGVETPYVANVHGYNTAPDNYLLTPQERTSLFTQGSFNFTDNVTFRT
EAMYNERKSEQLLAAMPVTGLTLSADSLYNPFDQNLTSVNRRFIETGGRSFNQNVKNWHF
YGGLEGFFEFADRSFDWDVGYRYDKSDENVLTYGLFNLANLNNAYGPSELRNGVPVCVSG
PGGDVIPGCVPVNPLGPRGSITQDALDYTSFTAHDSSMVESKGYTANISGELFTLPAGPL
GFAAGYEYRKESGQFDPDAFIAAGLSTGNGARPTAGSYSLDEFYLELSVPVLADLPGAQL
LDFSLATRYSDYSNFGDTVNNKFGFRWKPIQDLMIRGNYSEGFRAPSINNLFAGNSDSFE
TYADPCSSQSGQLSNPVVAQNCAAAGVPANFVQPGAGNGAKQTLEPFTWTSNDQLQPETS
TSRTLGMVFSPSFAQGLNVSLDWWQIEIENAITRPESQFILDKCYGGSAGEQAEYCALVT
RDPNYADGAYTVTNINMPLLNLASYKVEGWDLAVNYRLPETAIGQFTISWDSTYLSSWET
KATADSELEQFQGRYLNQDPYWRIRSNLYVDWSLGDFGINWGLRYKSGMAEACPLSTALA
QAYCSDPDRVTADGAEPRNHIGATTYHDIQVRYSTPWNATVSVGLNNAFDKGPPVAYSTS
ANRFDPQYDVPGRYMYMQYRQRF