Protein Info for Xcc-8004.1496.1 in Xanthomonas campestris pv. campestris strain 8004

Annotation: DinG family ATP-dependent helicase YoaA

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 668 PF00270: DEAD" amino acids 37 to 89 (53 residues), 28 bits, see alignment 1.7e-10 PF13307: Helicase_C_2" amino acids 478 to 635 (158 residues), 149.6 bits, see alignment E=9e-48

Best Hits

KEGG orthology group: K03722, ATP-dependent DNA helicase DinG [EC: 3.6.4.12] (inferred from 100% identity to xcc:XCC2930)

Predicted SEED Role

"DinG family ATP-dependent helicase YoaA" in subsystem DNA repair, bacterial DinG and relatives

Isozymes

Compare fitness of predicted isozymes for: 3.6.4.12

Use Curated BLAST to search for 3.6.4.12

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0H2X6S1 at UniProt or InterPro

Protein Sequence (668 amino acids)

>Xcc-8004.1496.1 DinG family ATP-dependent helicase YoaA (Xanthomonas campestris pv. campestris strain 8004)
MSQLATASIEALSEGGALARQLDAFAPRAAQLRLTGAIAEAFEQRDVLLAEAGTGTGKTY
AYLVPALLSGLKTIVSTGTRALQDQLFHRDLPRVRAALGIGLRSALLKGRANYLCKYRTQ
QARGEPRFASPEQVTQFQRIVAWSGRTQFGDMAELDALPDDSPLLPMVTSTVDNCLGTEC
PFYSECFVVQARQRAQAADLVVVNHHLLLADLALKQEGFGEILPGAQAFVIDEAHQLPEL
AANFFGESFGMRPWQELARDCMVEARLVAGAQASLQAPILALDDALRGLRAGMEGLPPRG
TQWRALAKPQVREGFDAVLSALARLGEALLPLREASPGFDGCTARAQEALNRLSRWLGED
VPVPDFEQDLPETVDNDVLWYELSPRGFRCQRTPLDVSGPLREHREKSQAAWVFTSATLA
VGGEFDHIALRLGLNDPITLLQPSPFDWASQALCYLPPNLPDPAARGFGTALIAALHPVL
EASNGRAFLLFASHRALREAAEALRDGPWPLFVQGEAPRATLLQRFRTSGNGVLLGSASF
REGVDVVGDALSVVVIDKLPFAAPDDPVFEARLDAIRRDGGNPFRDEQLPQAVIALKQGV
GRLIRSETDRGVLVLCDPRLLNKGYGRTFLNSLPPFSRTREIDDVRAFFGSGPETGQAGS
EIATLLPD