Protein Info for Xcc-8004.146.1 in Xanthomonas campestris pv. campestris strain 8004

Annotation: Two-component system regulatory protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 210 PF00072: Response_reg" amino acids 6 to 116 (111 residues), 106 bits, see alignment E=1.3e-34 PF00196: GerE" amino acids 150 to 203 (54 residues), 59.1 bits, see alignment E=2.5e-20

Best Hits

Swiss-Prot: 35% identical to NARP_ECOLI: Nitrate/nitrite response regulator protein NarP (narP) from Escherichia coli (strain K12)

KEGG orthology group: None (inferred from 100% identity to xcc:XCC0109)

Predicted SEED Role

"Two-component system regulatory protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0H2X2C6 at UniProt or InterPro

Protein Sequence (210 amino acids)

>Xcc-8004.146.1 Two-component system regulatory protein (Xanthomonas campestris pv. campestris strain 8004)
MSALRIALADDQVLVRAALRALLQQQGITVVCEADDGQALLDALATHNVDVVLSDIRMPG
LDGIAALEQLRARGDRTPVLLLTTFDDSELLLRACEAGAQGFLLKDAAPDDLHEAIARVA
AGETLLQPVSTDPVRARYQFRDQQAPRETFNEREVAILRLLAGGYSNKEIARTLFLAEGT
VKNYVSTILDKLGTRDRTRAVLKAITLRVI