Protein Info for Xcc-8004.145.1 in Xanthomonas campestris pv. campestris strain 8004

Annotation: two-component system sensor protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 409 transmembrane" amino acids 50 to 71 (22 residues), see Phobius details amino acids 77 to 97 (21 residues), see Phobius details amino acids 104 to 121 (18 residues), see Phobius details amino acids 127 to 143 (17 residues), see Phobius details amino acids 148 to 166 (19 residues), see Phobius details amino acids 172 to 192 (21 residues), see Phobius details PF07730: HisKA_3" amino acids 224 to 286 (63 residues), 49.5 bits, see alignment E=5.1e-17 PF02518: HATPase_c" amino acids 323 to 408 (86 residues), 31.8 bits, see alignment E=1.7e-11

Best Hits

KEGG orthology group: None (inferred from 100% identity to xcb:XC_0113)

Predicted SEED Role

"two-component system sensor protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0H2X3W6 at UniProt or InterPro

Protein Sequence (409 amino acids)

>Xcc-8004.145.1 two-component system sensor protein (Xanthomonas campestris pv. campestris strain 8004)
VTPVCPGAAPATVAAGHRSHLPEVTFCIAAIAVGGCGGQHRRMTTLLRDLLKPLNLAGVF
TIAAVALSFGQDLAPHGLWRWATVIGFTALFLFRALLPPRPLPQHAALLLQALLAVALIW
LEPRTGTSPVLLVLVAAQAAMRWPPPQVLALMLVLNAAMYAVFVLAGVPRPFLMVAIYTS
FQAFAALTANYARSAERARDALVYVNADLLATRALLADSARDAERLRLARELHDVAGHKL
TAMRIHLRLLRAEPALAPREDLRMLEQLSGELLGDIRSVVQSLRDDAGLDLHTALHALAA
PFPRPALRLQIDAQVRVSDPQVAEALVRLVQEALTNAARHGDADTVTVAVRCDAGALCVD
IQDDGRCAEQIHEGNGIAGMRERLAALSGQLDLRRAAHGGLHLTARLPA