Protein Info for Xcc-8004.1435.1 in Xanthomonas campestris pv. campestris strain 8004
Annotation: Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4)
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Swiss-Prot: 100% identical to RUVC_XANCB: Crossover junction endodeoxyribonuclease RuvC (ruvC) from Xanthomonas campestris pv. campestris (strain B100)
KEGG orthology group: K01159, crossover junction endodeoxyribonuclease RuvC [EC: 3.1.22.4] (inferred from 100% identity to xcb:XC_1132)Predicted SEED Role
"Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4)" in subsystem DNA-replication or RuvABC plus a hypothetical (EC 3.1.22.4)
Isozymes
No predicted isozymesUse Curated BLAST to search for 3.1.22.4
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
See Q4UXM1 at UniProt or InterPro
Protein Sequence (174 amino acids)
>Xcc-8004.1435.1 Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) (Xanthomonas campestris pv. campestris strain 8004) MTRILGIDPGSQRTGIGIIDVDESGRSRHVFHAPLVLLGEGDFAQRLKRLLHGLGELIET YQPQEVAIEKVFMGKSADSALKLGHARGAAICAVVLRDLPVHEYAATEIKLALVGKGGAD KVQVQHMVGIMLNLKGKLQADAADALAVAITHAHVRATAQRLGVNTQQAWSRKR