Protein Info for Xcc-8004.1411.1 in Xanthomonas campestris pv. campestris strain 8004

Annotation: Outer membrane receptor proteins, mostly Fe transport

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 799 signal peptide" amino acids 1 to 27 (27 residues), see Phobius details PF07715: Plug" amino acids 51 to 171 (121 residues), 76.5 bits, see alignment E=2.2e-25 PF00593: TonB_dep_Rec_b-barrel" amino acids 320 to 755 (436 residues), 112.4 bits, see alignment E=5.1e-36

Best Hits

KEGG orthology group: K02014, iron complex outermembrane recepter protein (inferred from 100% identity to xcc:XCC3046)

Predicted SEED Role

"Outer membrane receptor proteins, mostly Fe transport" in subsystem Hemin transport system

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0H2X4P9 at UniProt or InterPro

Protein Sequence (799 amino acids)

>Xcc-8004.1411.1 Outer membrane receptor proteins, mostly Fe transport (Xanthomonas campestris pv. campestris strain 8004)
MHTSTSLSIAVSIALAANAFAGTAQAQQPPPQKTLDTLIVTGTRVADRTVAESESPIDII
TEQSLQATGATDIATALGKLLPSLNFPRPAISDGNDAARPATLRGLSPDAVLVLVDGKRY
HTSALINYNPYVGRGSAPADLNSLPMSAVARIEVLRDGASAQYGSDAIAGVVNIVLKHGA
KTGDNSVSVNGGFMDKGDGEQNGIDGSVGMGFGGTGGDTTPGWVRLSWNYQNTMSTNRGE
NTNRATTVPGTPNPGGVPYQRHGDPKSTFYQGLAAFGYEFSPNLELYGHFSASRREVTSN
GYYRAADNPARNVPSIYPNGFLPQIYNPVNDRSAVLGIKGSTESEWNWDLSASYGKNDMS
FNILNSINTNLFYTTGASPTNFNSGGFETQQGTVNLDISRAFDWGLAYPVNVAFGAEHRQ
DRYRITAGSPDSYFFDPNTINPADGAPYPGGAQVFSGLEPSVAGKFGRHSNAVYANLEAN
LTEKLSGGIAGRYENYSDAGATRSGKLSARYAFTDTFSLRGTISNGFRAPSLAQQNYASV
VTLIQNGELVQVGTYRTSDPVALALGARPLSPEKSSNYGLGGVWQPTANFTSSLDVYQIR
IWDQILYSDQLQLAQPIGQVAAVQFFVNGATSRTRGVDWVNSYIADLGELGQLTLGASAN
YNKTTILELSNPNFGRASQGLLTDATPRTKYMASADWAIGGFTLNGNATRYGSIKRISDP
VDGSQDQTYDARWILNLSASQTWNAFTFTVGADNLTNQYPTKAQLTTAYDDRAGGLQYSS
LSPFGFNGRYWYGRVTYRF