Protein Info for Xcc-8004.1404.1 in Xanthomonas campestris pv. campestris strain 8004

Annotation: Vibrioferrin membrane-spanning transport protein PvsC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 392 signal peptide" amino acids 1 to 28 (28 residues), see Phobius details transmembrane" amino acids 40 to 60 (21 residues), see Phobius details amino acids 73 to 90 (18 residues), see Phobius details amino acids 95 to 117 (23 residues), see Phobius details amino acids 136 to 154 (19 residues), see Phobius details amino acids 160 to 179 (20 residues), see Phobius details amino acids 207 to 231 (25 residues), see Phobius details amino acids 243 to 263 (21 residues), see Phobius details amino acids 269 to 288 (20 residues), see Phobius details amino acids 294 to 314 (21 residues), see Phobius details amino acids 336 to 351 (16 residues), see Phobius details amino acids 360 to 379 (20 residues), see Phobius details PF07690: MFS_1" amino acids 17 to 263 (247 residues), 71.1 bits, see alignment E=4.1e-24

Best Hits

KEGG orthology group: None (inferred from 100% identity to xcc:XCC3053)

Predicted SEED Role

"Vibrioferrin membrane-spanning transport protein PvsC"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0H2X5B1 at UniProt or InterPro

Protein Sequence (392 amino acids)

>Xcc-8004.1404.1 Vibrioferrin membrane-spanning transport protein PvsC (Xanthomonas campestris pv. campestris strain 8004)
MKRILGPVLAAHYLAAFTALGMPLFLPQVLAELAPSAAIGWSGVLYVLPTLCTALTASTW
GRLADRYGRKRSLLRAQLGLALGFAIAGFAPTLPWLVVGLIVQGTCGGSLAAANAYLASQ
PQAGPLARALDWTQYSARLAMVSAPALLGLAVALGPAQALYRALALLPLVAFALTWRLPA
DQPAPPAHSPRTASPRATQALPSVANAAWPALMVAQFLFCFAMVVTFPYFIPYALARGAG
HDALAGLLYSLPHLVYLVVLPWWRRGDGAAWLVPGLLLFALACAWQAFLDDTVALAGARL
LFGLGMLFGLRGLNRSLAAVATGQGAGRLFGRFDACGKWAGVLAGVAAGALTQRWGPTTP
FLAAALAAAAAALTVLVRFPSRRIADVAAHDA