Protein Info for Xcc-8004.1269.1 in Xanthomonas campestris pv. campestris strain 8004

Annotation: glycosyl hydrolase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1154 signal peptide" amino acids 1 to 28 (28 residues), see Phobius details PF13385: Laminin_G_3" amino acids 56 to 194 (139 residues), 48 bits, see alignment E=4.9e-16 PF02837: Glyco_hydro_2_N" amino acids 334 to 401 (68 residues), 50.9 bits, see alignment 5.4e-17 PF00703: Glyco_hydro_2" amino acids 471 to 577 (107 residues), 50 bits, see alignment E=1.4e-16 PF02836: Glyco_hydro_2_C" amino acids 652 to 792 (141 residues), 27.2 bits, see alignment E=6.6e-10 PF18368: Ig_GlcNase" amino acids 1038 to 1142 (105 residues), 87.6 bits, see alignment E=1.8e-28

Best Hits

KEGG orthology group: None (inferred from 100% identity to xca:xccb100_1015)

Predicted SEED Role

"glycosyl hydrolase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1154 amino acids)

>Xcc-8004.1269.1 glycosyl hydrolase (Xanthomonas campestris pv. campestris strain 8004)
MLMVRKAFRRGALWLLCGCVGWTAVEAAPAKVDPPGPYDVRVLAGGVGLSKTLAADAPML
AADADWSVSGWVRPAMDVPGTVRIAGLGDARGDGRFFVIDNGRLGFAQGDSVLRSKQALP
VATWTQIAAVAQGARLTLYANGRQVASGTRVSRAVAPALVFGPRVPADAASLHFGGDIAN
FTARAGALDAAAIAQQARHAPNEILQRFEDASPGWRVQTKQMAGQLEPQPAATLPRSAAP
FSSPVAKPVTNAPALQPLDALSWRVGGWQLAAAPDLGTRGGAELSRGAAPSSSAWHVATV
PGTVLTTLVDRGVYPDPDIGLNNMAIPESLSRQDWWYRSTFELPASTQGKRLELVFNGIN
YAGEIWVNGVQVGRTRGAFARGRFDVSSYLTPGRNAIAVRVSPPPHPGIAHEQSMTAGVG
ENGGMQALDGPTFIASEGWDWIPAVRDRNAGLWQDVQLHATGPLAVGDTHVVTAKLAPGH
RRAELEIAVPLRNTSGTAVQGTVQLAFGDVRIQREVNVPAGGTTLTLTAADTPELVVTNP
RLWWPNGYGEPSLYTLQVGVAAGGVQSDLQQLRFGIREVTYELSLFDERGALRRVLVDLN
QARQRGERIVDVRHAAIRPVPGGNAQSLYPGALASPAVTQLDDSTLAPHLVLRINGVRIA
IKGGNWGMDDWRKRVSRERLEPYFRLQRDAHFNVVRNWVGQNTGASFFDLADEYGMLVLN
DFWQSTQNYNMEPADAALFLANAAEVITRFRNHPSIVLWFGCNEGVPAPILNEGLDALVA
ALDGTRWYTASSNEVNLQGSGPYNYREPVAYFNKLAQGFSVEVGTPSFSTLESFKASVPA
VQDQWPISDSWAYHDWHQSGNGDTASFMRSLSDKLGAPTSLDDFERKAQLLNYETYRAIF
EGFNAQLWTKNSGRLLWMSHPAWPSNMWQIYSHDYDTHAAYYGVRNAAEPLHVQMNLPGH
EVVVVNNTTTAVRGLRVRAETYAADGRLLQQREQAVDAAAVAVSAPVLQLTPLLANAKDL
GFVRLQLLERDGTVRSRNFYWVARDAAAMRCLDALAPVPLELTTQLQAGDAPVLSATVRN
PSQHVALGAKLTLVDAQGQRILPAYYSDNYLNLAPGESRTVEIRGPAEASLRAARVQLRG
WNLAPSSGTASGSP