Protein Info for Xcc-8004.1179.1 in Xanthomonas campestris pv. campestris strain 8004

Annotation: Proline imino-peptidase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 442 transmembrane" amino acids 88 to 106 (19 residues), see Phobius details PF00561: Abhydrolase_1" amino acids 148 to 257 (110 residues), 45.3 bits, see alignment E=1.8e-15 PF12146: Hydrolase_4" amino acids 149 to 415 (267 residues), 60.1 bits, see alignment E=4.2e-20 PF12697: Abhydrolase_6" amino acids 150 to 418 (269 residues), 43.9 bits, see alignment E=9.5e-15

Best Hits

KEGG orthology group: None (inferred from 100% identity to xca:xccb100_0967)

Predicted SEED Role

"Proline imino-peptidase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (442 amino acids)

>Xcc-8004.1179.1 Proline imino-peptidase (Xanthomonas campestris pv. campestris strain 8004)
MAQCLHWIRYADRMAALRNPAAIEQTKPAWRTRAYNALVRPGRSVLTVIAAEFAHAQHST
RMPRTSGTTDRRPAHAGRQRTKEHMNNFWKAFALLALCAPVVGVAAPKQSALADTCRVPG
APVHEAGLVQIGGIQQWVTVEGADCRNPVVLIVHGGPGNPNTPFAQRLFGSWTRDFTVVQ
WDQRGSGKTYAANKPAEGEALTMQRLTQDGVEVARHAMQQLGKRKVILMGGSWGSALAAH
MAKANSDLFHAYVGTAQLVNYQDDVAAGYAATMQLVQAANDHDALGKLEQIGPPPWTNPR
NFGILRRVSRKYEALRTEPAPADWFRFSAEYDTPEYRAAYEAGEDYSFLQFVGLAGNGMG
PQINLRALGPAFAMPVYLLQGDQDLVTPLTVSKAYFETLSAPTKEFLILPRTGHDPNPTM
MDTQLQVLTTRVRAQAVANDAR