Protein Info for Xcc-8004.1174.1 in Xanthomonas campestris pv. campestris strain 8004

Annotation: Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 506 TIGR01783: TonB-dependent siderophore receptor" amino acids 2 to 506 (505 residues), 241.8 bits, see alignment E=8.4e-76 PF00593: TonB_dep_Rec_b-barrel" amino acids 35 to 476 (442 residues), 189.4 bits, see alignment E=1.1e-59

Best Hits

KEGG orthology group: K02014, iron complex outermembrane recepter protein (inferred from 100% identity to xcc:XCC3215)

Predicted SEED Role

"Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid" in subsystem Ton and Tol transport systems

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0H2X491 at UniProt or InterPro

Protein Sequence (506 amino acids)

>Xcc-8004.1174.1 Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid (Xanthomonas campestris pv. campestris strain 8004)
VRARVIGVYQDGESDMDRYNLRKKIGSAIIDADLTDSTLLSVGYEYQKKESDDVTWGGFP
LFFSDGTRTNYDRSFNPAADWTFWDTRLQRTFASLQQGFDNGWTLKANVSHEKTEAANHL
FYPFYTIFGFDRATGGGVVPYSGNYLTERKADGADVYAEGPFQLFGREHHLVAGASYNRR
EFTNNGTFDFPAPLDTYFGWNGAYPEPNWSPRTVQSTGTIKQKAAYVAGRFSLADPLTLL
VGARYTDWQIDGGNFDAAQGLVPFSDTQTEVTPYAGLVYDINDVWSTYVSYTEIFNPQTL
RDANGGYLDPLTGKGYEAGVKAAWFDDKLNASLAVFRIEQDNLGVATGGFVPGSSESAYE
AANGVVSEGFDFEISGRVTAGWNTTFGASHYTARDDSGTSINTQLPRTTLKLFNSYTPQG
AWSDLTVGGGVNWQNRSYYVDPVYGAFQQSAYALVSAFARYRLSPQFSVQLNIDNLLDKR
YYAQFNGGYGAWGASRNGMLTFNYTF