Protein Info for Xcc-8004.1127.1 in Xanthomonas campestris pv. campestris strain 8004

Annotation: transcriptional regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 921 PF17874: TPR_MalT" amino acids 475 to 789 (315 residues), 35.8 bits, see alignment E=1.4e-12 PF13424: TPR_12" amino acids 553 to 625 (73 residues), 41.4 bits, see alignment E=3.3e-14 PF00196: GerE" amino acids 848 to 899 (52 residues), 68.1 bits, see alignment 1e-22

Best Hits

KEGG orthology group: K03556, LuxR family transcriptional regulator, maltose regulon positive regulatory protein (inferred from 100% identity to xcb:XC_0891)

Predicted SEED Role

"transcriptional regulator"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0H2X4G5 at UniProt or InterPro

Protein Sequence (921 amino acids)

>Xcc-8004.1127.1 transcriptional regulator (Xanthomonas campestris pv. campestris strain 8004)
MLKPVALLTPRPSPSRDLPLPDWLLASKLEPPLPRVGAVVRGGLLAVLDQAQARPLTLLL
APPGFGKSTLLTQWHAQLLAREPVAVAWLSLDEEDAEPARFLGHLALALQGAGADPALCA
PALHGRDHDPRDALNALIRALRAAPRRISVILDDYDRPGGSAIDELVLRLIEHAGGRLHL
LLSTRRVPGLPLARLELQAQLTRVGSGELALDEDEAQALLGAQVAAPVVDELRRYTEGWP
VALHLARLWLEGGAQRQQEVATRFSGRNAQIAAYLAEQVVNDLDADTRDLLLRTSPLERV
NAALADAVRQRDDSGRLLAGLEHFHGLLIPLDGEREWFRYHPLFADFLQQLLDREHPAGA
LQIHQRAARWFGEHQYLSDAVRHASRGECGDLAASYVARAGTWQLLLTHGTHQVRALLRH
FDHRTIRDTPALNLTQAHLHMKLGEFSHARLLLERFRDFPAALREPLQRDYTVVVAALRE
RLDEICGNPHGLTQIAGQAAALDEDDHLGRGMLLCICAATALAQGGFALAERYAHGGREA
MGRGGSELGTGHALLVLGQSFFYRGRLGDAEACYQHALNGCLRAPQPDRVLQATAHCLLA
QLHYERGHHDDAADLLHPALDILEQHDGSTDVLAAGYDTALGLERLRDHSGRSAAALLEH
VEQIAHGRKLARLSELAAAWRLMVMLEHPGNAAIDVLIARTGGESGLAHTLRSPHRWRDR
AAMGFALARWHRLAGRSSAALTILGQIEQACLASDNLCHLARTRARIALVLQQRGELAAA
LPYLYSALDHVALTRSWQAIAELGLPAKAMLRSLRQHDPQTVAGTTRALTIQALLDRLSG
DDDPANDLFSERELEVLAQLARGYSNKQIARCLHLSENTVKFHLKNVYRKLDARSREGAL
AQALQRGLLREMDPPTGPTTL