Protein Info for Xcc-8004.1071.1 in Xanthomonas campestris pv. campestris strain 8004

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 962 signal peptide" amino acids 1 to 27 (27 residues), see Phobius details PF07715: Plug" amino acids 56 to 168 (113 residues), 80.1 bits, see alignment E=1.7e-26 PF00593: TonB_dep_Rec" amino acids 497 to 925 (429 residues), 115.9 bits, see alignment E=4.6e-37

Best Hits

KEGG orthology group: K02014, iron complex outermembrane recepter protein (inferred from 100% identity to xcb:XC_0849)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0H2X4C7 at UniProt or InterPro

Protein Sequence (962 amino acids)

>Xcc-8004.1071.1 hypothetical protein (Xanthomonas campestris pv. campestris strain 8004)
MNLRTSAVRLGLLPAGIAIALTPAFAANAQEQSAPSTTTLDRIEITGSRIRSVDVETAQP
VFTVTQQDIQKSGLVSVGDILQNLSIAGTQTYSKAAVLTSDPEQGGQYVNLYNLGENRTL
VLVNGKRWTSSLSGLTDMSTIPSSLIERIEVLKDGASAIYGSDAVAGVVNIILRQNYDGA
EASAYFGQNGRGDGSKEQYSFTAGTTTDRSSLVFGANYTNEDPVWAKDRALTRYSAGPNH
IEDSLSATGPWGRFTSNDQTYILNHTGSFDGRGVGADSRNIANYHNEITTDDYYNSVDQM
MLQQSSRNKSIFTTGSYNLTDSLTFKSTAMYSERDSNRQIAGYPLQASSQPQFPVAISGT
SYYNPVGQDINSWFRRTVELPRTTESNVKTLHFDAALEGVFDVGSHGWNWDVGFNYNKYD
VTQVSRGNINLLALQKALGPSFLNAQGQVQCGTAASPLPLGTSNALGQCTPFNILGGPSA
STPNALQYINALGQATQQSLSKQWTANITGGLFDLPAGELGLAAGVEHREISGYDYPDQL
SSAGYTTDLAAQATEGRYQTNEAYLELLIPVLKDLPGAKELSFDVAARYSNYSRFGDTTN
SKFSFTWKPIDDLLVRGTYGTGFRAPTLSDTFGGGSQTFDTFTDPCDATFGSLGNAGVAA
RCAGEGLPAGFRQTDTAGNAVTRRDVQGNAPFNSGVGNAELEPEYSITRTVGMVYSPHWV
QGLDFSLDWYRISISNIITSLTANDVLNNCYLNSLASYCADYGRDAVTGQVTTLSRGNVN
LGRLETEGYNFGVRYRMPETAYGKFAVNLDTNYLATYKSQAEAGAEWANAAGYWNFPRVR
ATLGLDWSLGALSANWNLRYYGGFRDYCWDAAAGIECNDPNYQTPNPGWGGGTGSNKKGS
ISYQDVSVTWQAPWDGSVTVGARNIWNKQPPVTYSITNSSTAAIDPMLDYDRFLFVQYNQ
RF