Protein Info for Xcc-8004.1052.1 in Xanthomonas campestris pv. campestris strain 8004

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 249 PF13489: Methyltransf_23" amino acids 30 to 187 (158 residues), 54.4 bits, see alignment E=5.4e-18 PF03141: Methyltransf_29" amino acids 37 to 137 (101 residues), 29 bits, see alignment E=1.7e-10 PF05175: MTS" amino acids 37 to 136 (100 residues), 26.7 bits, see alignment E=1.6e-09 PF01209: Ubie_methyltran" amino acids 37 to 154 (118 residues), 68.4 bits, see alignment E=2.5e-22 PF13847: Methyltransf_31" amino acids 39 to 153 (115 residues), 74.8 bits, see alignment E=2.4e-24 PF08241: Methyltransf_11" amino acids 44 to 139 (96 residues), 90.1 bits, see alignment E=4.9e-29 PF13649: Methyltransf_25" amino acids 44 to 136 (93 residues), 83.7 bits, see alignment E=5e-27 PF08242: Methyltransf_12" amino acids 44 to 137 (94 residues), 64.3 bits, see alignment E=6e-21

Best Hits

KEGG orthology group: None (inferred from 100% identity to xcb:XC_0835)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0H2X4B9 at UniProt or InterPro

Protein Sequence (249 amino acids)

>Xcc-8004.1052.1 hypothetical protein (Xanthomonas campestris pv. campestris strain 8004)
LSTHVAAQFGPQAQAYLQSEVHAQGAEFAELRAGLAGHRNGRLLDLGCGAGHVSFQLAPL
MDEVVAYDLSADMLEVVAATAADRGLTQMRTLQGVAERLPFESGSMDVVVSRYSAHHWSD
LGQALREVRRVLRPGGIAALIDVVAPGLPLLDTHLQAIELLRDTSHVRDYSVAQWLQVVG
DAGLHVQRHHCQRLQLDYLTWVDRMRTPEVLRAAIRALQDTAVDDVRDYFQIGADGSFST
DVLVLWATR