Protein Info for Xcc-8004.104.1 in Xanthomonas campestris pv. campestris strain 8004

Annotation: Permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 346 transmembrane" amino acids 9 to 27 (19 residues), see Phobius details amino acids 32 to 52 (21 residues), see Phobius details amino acids 62 to 84 (23 residues), see Phobius details amino acids 138 to 161 (24 residues), see Phobius details amino acids 202 to 220 (19 residues), see Phobius details amino acids 225 to 254 (30 residues), see Phobius details amino acids 261 to 283 (23 residues), see Phobius details amino acids 295 to 325 (31 residues), see Phobius details PF01594: AI-2E_transport" amino acids 14 to 327 (314 residues), 164.5 bits, see alignment E=1.9e-52

Best Hits

KEGG orthology group: None (inferred from 100% identity to xca:xccb100_0087)

Predicted SEED Role

"Permease"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0H2X3V0 at UniProt or InterPro

Protein Sequence (346 amino acids)

>Xcc-8004.104.1 Permease (Xanthomonas campestris pv. campestris strain 8004)
MPSSDLRAFVVRVVIVLALVAYAWLLWALSGLLLMVFGAVVVAVLLRALASWVTRYTPLS
DGMALGLVVVVVAVGFTALLWLFGSQLATELGALQRTLPQAWARFHDWVAAGPLGPALEE
LTRQAPARVSNLAPRAGAFALSITGGVANLFLVLAGAVYLAAQPQLYRRGVLLLFPVQVR
ATMDDAVRASGTALRLWLRGQLLAMVVVGALTGLGLWALGIPGALALGIIAGLLDFVPIV
GPILAAIPAILLGFTVSPQMALATAALFVVVQQIEGNILLPLIQQRTVDLPPVLLLFSLF
GIGTLLGPAGVLLAAPLTVVAFVLVKRLYVQEALHTPTSIPGQKHH