Protein Info for Xcc-8004.1036.1 in Xanthomonas campestris pv. campestris strain 8004

Annotation: Alpha-1,2-mannosidase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1119 signal peptide" amino acids 1 to 32 (32 residues), see Phobius details PF17678: Glyco_hydro_92N" amino acids 227 to 445 (219 residues), 139.4 bits, see alignment E=1.8e-44 TIGR01180: putative alpha-1,2-mannosidase" amino acids 228 to 964 (737 residues), 476.9 bits, see alignment E=5e-147 PF07971: Glyco_hydro_92" amino acids 451 to 961 (511 residues), 480.3 bits, see alignment E=7.2e-148

Best Hits

KEGG orthology group: None (inferred from 100% identity to xca:xccb100_0854)

Predicted SEED Role

"Alpha-1,2-mannosidase" in subsystem Mannose Metabolism

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0H2X421 at UniProt or InterPro

Protein Sequence (1119 amino acids)

>Xcc-8004.1036.1 Alpha-1,2-mannosidase (Xanthomonas campestris pv. campestris strain 8004)
VRSSAVVPRPLHLLRPVALALAVATALPAAAADGFFASFDTHERDLVADRANALQVAIGS
GPDAPYAAKHHAGYSGAHALHYSSQGGAGRRTLFTTDHLIDADTTLSWMVLPESVGDDHV
SSTYVSLDLLLDDGSRLSASNALDQHGVAIGAAAHGASKTLYPQQWARKAVRLSDVAGLR
GRRITAIALEVAPQGGAPVSGWLDDIAIAEIPRVAPARPSDWVLTTRGTQSNGTFSRGNN
FPATAVPHGFNFWTPATDAGTLGWLYRWNEHNGADNRPRLQALSLSHQPSPWMGDRQTFQ
VMPSKHSGAPEADRVKRALAFSHANEVARPYRYAVQLDNGIQAEIAPTDHAALFRFRFPP
GGDANLLFDNVDARGGLTLDAATQTLSGYTDVRSGLSTGATRMYVYARFDTPWKASGRSD
TGRPTGWIKFAAGSTREVQMRIATSLISLEQAKHNLALEIAPQDSLERVAARAQDAWDAL
LGRVEVADASDDQRTTLYSNLYRLHLYPNSAHENAGSASAPDWRYASQNSWSDEATDGSA
VRSFAPIRDGRVYVNNGLWDTFRTAWPAYALFAPEAGALVQGFLEQARAGGWVARWSSPG
YADLMVGTSSDVAFADAWRKGVQGFDPAEAYAAALKNATVVPPDRHVGRKGMARSTFRGY
ADTDTHEGMSWSMEGALNDFGIAGMADALAQQTPDAVARERYATEALYFRHRAAGYAALF
DPAIGFFQGRTPDGGWRLDAAHYDPREWGNDYTESSGWTFAFTAPHDGEGLAALYGGRDA
LATKLDTFFATPETAQAALSGSYRGVIHEMTEARDVRMGMYAHSNQTAHHIPWMYLYAGQ
PWKTQQLTREILARLYLGGEIGQGYAGDEDNGEMSAWYLFAALGMYPLRMGAPEYVIGSP
LFTHASVQLPNGRTLTVNAPQNSPRNVYVQSLKVNGKPWRKTWLPHADIAEGATLDFVMG
PRPSRWGTDGDAAPPSLTPPGQHPAPLQDLLGTRARITRDDGGAVDALHDDDAATMATLS
STSAVTVSGIDAGTPTLYTLTSGNAAITNGGWTLEARTGSGHWTVIDQRRDEMFRWPLQT
RPFRIAAPGAYTDYRLRVSTLKPVQLAEIELLRAAPASP