Protein Info for Xcc-8004.1018.1 in Xanthomonas campestris pv. campestris strain 8004

Annotation: Sugar transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 444 transmembrane" amino acids 12 to 32 (21 residues), see Phobius details amino acids 54 to 74 (21 residues), see Phobius details amino acids 86 to 104 (19 residues), see Phobius details amino acids 109 to 126 (18 residues), see Phobius details amino acids 147 to 165 (19 residues), see Phobius details amino acids 183 to 205 (23 residues), see Phobius details amino acids 251 to 274 (24 residues), see Phobius details amino acids 297 to 316 (20 residues), see Phobius details amino acids 323 to 340 (18 residues), see Phobius details amino acids 346 to 368 (23 residues), see Phobius details amino acids 381 to 404 (24 residues), see Phobius details amino acids 416 to 435 (20 residues), see Phobius details PF07690: MFS_1" amino acids 24 to 394 (371 residues), 84.7 bits, see alignment E=6.1e-28 PF13347: MFS_2" amino acids 58 to 397 (340 residues), 34.1 bits, see alignment E=1.2e-12

Best Hits

KEGG orthology group: None (inferred from 100% identity to xca:xccb100_0840)

Predicted SEED Role

"Sugar transporter"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0H2X4A0 at UniProt or InterPro

Protein Sequence (444 amino acids)

>Xcc-8004.1018.1 Sugar transporter (Xanthomonas campestris pv. campestris strain 8004)
MPGPCMSSTAPPLSFARILALNAGFFGVQYSFGLQQSNMSPIYNYLGADHASLPYLWLAG
PITGLVLQPFVGALSDRSVTRWGRRMPYMVLGALVCSLCLLAMPFSTALWMAVCLLWVLD
AANNVAMEPYRALVSDVLAPPQRPLGYLTQSAFTGLAQTLAYLTPPLLVWFGMSQDAANA
HHIPYVTIAAFVIGAGFSAASILLTARSVREPVVPAAEIARMRKAGTGLGATLREIGSAL
RDMPPTMRQLAPVMLFQWYAIFSYWQYIVLSLSTTLFGTTEANSHGFREAGLVNGQIGGF
YNFIAFLAAFAMVPVVRRVGPKYTHAACLLAAGVGMWVLPGIENRWLLLLPMIGIGLAWA
SMMGNPYLMLADSIPPERTGVYMGLFNLFIVLPMLIQIVTLPLYYEPLLHGDPRNVIRLA
GALMLAAAVAMLCVRIRKPKAVAA