Protein Info for TX73_024990 in Rhodopseudomonas palustris CGA009

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 408 transmembrane" amino acids 29 to 51 (23 residues), see Phobius details amino acids 58 to 75 (18 residues), see Phobius details amino acids 81 to 106 (26 residues), see Phobius details amino acids 118 to 140 (23 residues), see Phobius details amino acids 146 to 166 (21 residues), see Phobius details amino acids 196 to 218 (23 residues), see Phobius details amino acids 234 to 254 (21 residues), see Phobius details amino acids 266 to 289 (24 residues), see Phobius details amino acids 295 to 317 (23 residues), see Phobius details amino acids 329 to 348 (20 residues), see Phobius details amino acids 362 to 385 (24 residues), see Phobius details PF07690: MFS_1" amino acids 4 to 305 (302 residues), 123.1 bits, see alignment E=1.3e-39 amino acids 265 to 398 (134 residues), 36.6 bits, see alignment E=2.6e-13

Best Hits

KEGG orthology group: None (inferred from 100% identity to rpa:RPA4808)

Predicted SEED Role

"FIG01005417: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (408 amino acids)

>TX73_024990 MFS transporter (Rhodopseudomonas palustris CGA009)
MVVNFADKIVVGLAGVPIMQELKLSPEQFGLLGSSFFFLFSITAIVVGFIVHRVETRWVL
LALALVWAVAQFPMVGEVSFATFVICRIILGAGEGPAFSVAAHAIYKWFPDHQRTLPTAI
LSQGSAFGVILAVPALNWIIVNHSWHYAFAALGIVGLMWAVAWFALGKEGPLVPSPAVAA
AEVRIPYARLLTSRTFIGCVLATFGAYWALSLGLTWFTTFIVQGLGFSQHQAGLVSITPW
VFGACVVLFTGWLSQRLMQRGVSSRMARGVLGAAPLLVGGAIILMLPYIDSPTARIVALV
VGSGLCGSIYVVCPPMIAEFAPVSQRGAAIAIYGALYTLAGIIAPWVMGSVLQHSASLLH
GYIVGYAINGAVMIASGVAGLLLLWPNTERARLLRSAEPMSLGLRKPA