Protein Info for TX73_024780 in Rhodopseudomonas palustris CGA009

Annotation: SGNH/GDSL hydrolase family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 322 signal peptide" amino acids 1 to 31 (31 residues), see Phobius details PF00657: Lipase_GDSL" amino acids 114 to 294 (181 residues), 47.3 bits, see alignment E=2.9e-16 PF13472: Lipase_GDSL_2" amino acids 116 to 289 (174 residues), 72 bits, see alignment E=9.5e-24

Best Hits

KEGG orthology group: None (inferred from 100% identity to rpa:RPA4767)

Predicted SEED Role

"Lipolytic enzyme, G-D-S-L family precursor"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (322 amino acids)

>TX73_024780 SGNH/GDSL hydrolase family protein (Rhodopseudomonas palustris CGA009)
MRVSDPLKPAAVAAFLATALLLISSPASFAQTPSEPVAEAAPTVTPGEGEVDVSTLDRKK
TVAGAALDKIKDVAKQAGDILGRVPCLPPKGGAKSIGALPRVARKLADHRPVVIVAFGSS
STQGYGSTSPAFTYPNRLAAQLRRHYPASDITVVNSGKGGEDAPEMMRRLKSTVLDAQPD
LVIWQVGTNAILRNLDPADTGKLVDDGIKAIQSAGADIVLVDPQYVPRVNERGENAGKMI
KALGRLAELRRVGIFPRFEVMKEWHEQQAIPFDKFVIADGLHMNDWGYACFAQLLGDGII
RSVDQVRLGTAGPSDVTAFRPM