Protein Info for TX73_024625 in Rhodopseudomonas palustris CGA009

Annotation: TIGR02302 family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 853 transmembrane" amino acids 43 to 65 (23 residues), see Phobius details amino acids 71 to 93 (23 residues), see Phobius details amino acids 161 to 179 (19 residues), see Phobius details PF13779: DUF4175" amino acids 23 to 853 (831 residues), 993.4 bits, see alignment E=4.3e-303 TIGR02302: TIGR02302 family protein" amino acids 23 to 853 (831 residues), 1374.3 bits, see alignment E=0

Best Hits

KEGG orthology group: None (inferred from 100% identity to rpa:RPA4739)

Predicted SEED Role

"Methyl-accepting chemotaxis protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (853 amino acids)

>TX73_024625 TIGR02302 family protein (Rhodopseudomonas palustris CGA009)
MSGSIPDPSQAPHDEEAVARLHLDKAIGRATLAIAWERAWPHLARVMSVVGLFLALSWAG
LWLALPFSARIAGLVLLAALALAALIPAIGFRWPSRDEALARLDRNTGLKHRPATALGDT
LASGDPVARALWQAQRDRTLATIRGLKPGLPSPRLPIHDPWGLRALVVILLVATFFAAGE
ERSARVMAAFDWKGAMSPSTVRVDAWVTPPVYTNKPPIILTAASNKDLGTPGSGPLPVPV
GSTLLVRSSGGDLDIAVGGGVVEVKPDSDAPKGTSERHFRITGDGTARVRAPSSEAPWSF
TATPDKPPAIALAKEPQRQARGSLQLSYKLEDDYGVTEAEAQFVAAPPAKAPGAKPGDAP
RPLFEAPQFKLVLPNARTRVGVGQTVKDFSEDPYAGAEVTLTLTAKDEASNQGHSEPFTM
RLPERLFTKPLARALIEQRRILALDANANSQVYAALDALLIAPEVFTPDAGQYLGLYTIA
DQLERARTDDALREVVGNLWSLAVSIEDGDASDAEKALRAAQDALKDALERGASDDEIKQ
LTDKLRAALDTYMRQLAQQLRNNPQQLARPLDPNTKVMRQQDLENMIQRMERLSRSGDKE
AAKQLLDQLAQMLENLQMAQPGQGGDSGDMEQALNELGDMIRKQQQLRDKTYKQGQDQRR
DRMRGQDGEQNLGDLQQDQQNLHDRLRKLQQELAKRGLGQSPGGEKGEKGQQGQQGQQGE
GGLDQADSAMGDAEGRLGDGNADGAVDSQGRALEALRQGAQKLAEAMQQGDGDGQGDGQG
NRPGRQQSGANQTDPLGRPLRGRDLGDDLTVKIPGEIDVQRVRRILEELRRRLGDSARPQ
IELDYIERLLKDY