Protein Info for TX73_024450 in Rhodopseudomonas palustris CGA009

Annotation: DedA family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 193 transmembrane" amino acids 17 to 40 (24 residues), see Phobius details amino acids 53 to 78 (26 residues), see Phobius details amino acids 134 to 159 (26 residues), see Phobius details amino acids 171 to 190 (20 residues), see Phobius details

Best Hits

KEGG orthology group: None (inferred from 100% identity to rpt:Rpal_5187)

Predicted SEED Role

"FIG139438: lipoprotein B"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (193 amino acids)

>TX73_024450 DedA family protein (Rhodopseudomonas palustris CGA009)
MLRKIYDWCIDAAHKPYALWILGMVSFAESSFFPIPPDVMLIPMSLARPQRAWFYAALCT
VTSVAGGVVGYAIGALLYDSVGHWLIQLYGYGDKVEAFRAGYAQWGAWIILLKGLTPIPY
KLVTITSGFAGYDIWLFILFSIIARGGRFFIVAVVLNRYGVVIREQIEKRLGLWVTIGAV
VLVLGFVIAFKLV