Protein Info for TX73_024365 in Rhodopseudomonas palustris CGA009

Annotation: SCO family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 199 transmembrane" amino acids 12 to 33 (22 residues), see Phobius details PF02630: SCO1-SenC" amino acids 45 to 178 (134 residues), 173.5 bits, see alignment E=1.1e-55

Best Hits

KEGG orthology group: K07152, (no description) (inferred from 100% identity to rpt:Rpal_5169)

Predicted SEED Role

"Cytochrome oxidase biogenesis protein Sco1/SenC/PrrC, putative copper metallochaperone" in subsystem Biogenesis of cytochrome c oxidases

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (199 amino acids)

>TX73_024365 SCO family protein (Rhodopseudomonas palustris CGA009)
MSAQAKSIRPLVVIAAFAGSLIVGLVVVLWLLGGLQKISAPATIGGAFRLTDQNGQVITE
QSMKGKPTLIFFGFTRCPDVCPTSLFELSQVLGAMGPDADRINAYFVSVDPERDTPQSMK
DYLSSFDPHLKGLVGTPEATEKIEKAYRVYAKKVPLKDGDYTMDHTALIYLMDKSGNFVS
PFNIKRKPEEAAADLKRYL