Protein Info for TX73_024330 in Rhodopseudomonas palustris CGA009

Annotation: AsmA family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 605 signal peptide" amino acids 1 to 33 (33 residues), see Phobius details PF05170: AsmA" amino acids 283 to 473 (191 residues), 81.9 bits, see alignment E=5e-27 PF13502: AsmA_2" amino acids 325 to 540 (216 residues), 81.5 bits, see alignment E=7.3e-27

Best Hits

KEGG orthology group: K07289, AsmA protein (inferred from 100% identity to rpa:RPA4681)

Predicted SEED Role

"Possible asmA protein precursor"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (605 amino acids)

>TX73_024330 AsmA family protein (Rhodopseudomonas palustris CGA009)
MKPIRIAGAIAALLLVAATLLIAIGIPAGALTGAIQSRIERDTGYRVTIAGTGTVRLFPA
VALTLHDVSAELPGGRTTDPRLKIATVRAELPLTSLISATPRLTELTLISPELHLPLLRG
RDEAAATPAPARKSSAELADIERIVVQDGVVVMTSTADNIERRIAGIQADIEREDADGPI
TASGSATLGRSPLSFELTTTPPADDKQPMLVDLTLDAPGLLTSRLSAKAEARLRGTTFAV
NGISGKLGDAPFNGWASVDVAGKPVVKLDLDFQRLDLIAITRTAPPGSPWSETPLDLAGL
NYVDADVRLSATELHIGAARIAPASADAKLAGGVLSVQASRLAAYGGQATGKLAIDASGA
VPAFDLQGDLSDVHALPLLDGLADFERLDGRLQAKLALRSSGGSARAIASNLNGSAAVGL
RDGAIHGIDVVRMIRNLTAHIQDGWQIAPTDATDLSEFAASFRIAQGKAETSDLKLAGPL
VRMTGAGAIDLPTKTLALKVEPKLVLTTQGQSALERSVAPAPEPIGFGIPVRIEGPWIAP
RIFPDIAGVLDDPDKAYQRLREVGSGLFGLLGSSRDDRNNSGDASRSDGDSGAAVNAIIK
QLFGR