Protein Info for TX73_024140 in Rhodopseudomonas palustris CGA009

Annotation: ABC transporter permease subunit

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 597 transmembrane" amino acids 26 to 50 (25 residues), see Phobius details amino acids 78 to 99 (22 residues), see Phobius details amino acids 108 to 130 (23 residues), see Phobius details amino acids 161 to 181 (21 residues), see Phobius details amino acids 189 to 209 (21 residues), see Phobius details amino acids 215 to 239 (25 residues), see Phobius details amino acids 260 to 284 (25 residues), see Phobius details amino acids 324 to 343 (20 residues), see Phobius details amino acids 350 to 374 (25 residues), see Phobius details amino acids 398 to 423 (26 residues), see Phobius details amino acids 434 to 457 (24 residues), see Phobius details amino acids 463 to 489 (27 residues), see Phobius details amino acids 510 to 532 (23 residues), see Phobius details amino acids 538 to 557 (20 residues), see Phobius details amino acids 566 to 587 (22 residues), see Phobius details PF00528: BPD_transp_1" amino acids 101 to 280 (180 residues), 33.1 bits, see alignment E=2.3e-12 amino acids 413 to 584 (172 residues), 42.1 bits, see alignment E=4.2e-15

Best Hits

KEGG orthology group: K02053, putative spermidine/putrescine transport system permease protein K02054, putative spermidine/putrescine transport system permease protein (inferred from 100% identity to rpa:RPA4649)

Predicted SEED Role

"FIG01005775: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (597 amino acids)

>TX73_024140 ABC transporter permease subunit (Rhodopseudomonas palustris CGA009)
MTTLSLTDEPRRQPASSLAMKLKNPALLLLPAVAFLGFIYLLPLIDLIRISISGPSWLTY
FQRVFAVPLYWESLVRTMQISVTVAFLCLLFGYPTALLIHRTQGLTRALIATAIVLPYFI
AILIRTYAWMVLLGRTGPVNKLLVAIGILGEPVQLLFHRGTVLLGMTAVLLPLMVLTIYS
SVSRLDPGLTRAALASGAGPIAVFWRVLLPLTLPGIGAGFLLVFVAAIGFFITPTLLGGP
GDQMFAMHITQQADSVTSEGFLQALGVVLLLITLAVVAIAGRFLGLEFIWGGRKLTESNA
ASTTSTAADDSTRRSIGSSLADTIGWPVLRLLGLLPAGVGTWTVRVMGGVVVAVLILPIV
VVMVISFSSASYLTFPPPGFSLRWYEQFFSDTNWMRAFWTSALIALVSAVIAVGLGTCAA
LGIVRGDIRGKSAIMLLLVSPIIVPPVVLGLSLYTLFLKFDLIGSVFGLAAAHAIGGLPI
VVVILAAALQGVDKRLEQAAAVHGASSLTVLRLVTLPAIAPGLAAATFFAFLHSFDELVL
TLFLSSAQLKTLPLMLWGDINYRLNPVLAVVSTLEVLLVVGGLFLARPVLATSQKAN